Hymenobacter busanensis: GUY19_04025
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Entry
GUY19_04025 CDS
T07319
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbn
Hymenobacter busanensis
Pathway
hbn03030
DNA replication
hbn03410
Base excision repair
hbn03420
Nucleotide excision repair
hbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GUY19_04025 (ligA)
03410 Base excision repair
GUY19_04025 (ligA)
03420 Nucleotide excision repair
GUY19_04025 (ligA)
03430 Mismatch repair
GUY19_04025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbn03032
]
GUY19_04025 (ligA)
03400 DNA repair and recombination proteins [BR:
hbn03400
]
GUY19_04025 (ligA)
Enzymes [BR:
hbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GUY19_04025 (ligA)
DNA replication proteins [BR:
hbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GUY19_04025 (ligA)
DNA repair and recombination proteins [BR:
hbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GUY19_04025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GUY19_04025 (ligA)
MMR (mismatch excision repair)
DNA ligase
GUY19_04025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GUY19_04025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
zf-NADH-PPase
TF_Zn_Ribbon
DZR_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QHJ06510
UniProt:
A0A7L4ZYI2
LinkDB
All DBs
Position
891686..893722
Genome browser
AA seq
678 aa
AA seq
DB search
MTDLFSVQEKIRALTERLHYLNHQYYQNDVSEVSDQEFDHLLRELQDLEKQYPEYAQPNS
PTQRVGGTITKQFPTAEHRYPMLSLANTYSEADLREFDERVQRGLEGAEYQYVCELKFDG
VAMSLRYEQGQLTQGVTRGDGTRGDVVTSNVRTIKTLPLHLREDRNMPADFEVRGEIFMP
LNVFNDLNAEREQNGEPLLANPRNAASGTLKLQDSAVVAARRLRFYAYSYLSPRQRDFPS
HSAALEALKRWGLPVSDTWRKAGSIDEVLSYIHEWDKKRFDLPVATDGIVIKVDDLRQQE
QLGYTAKSPRWAIAYKYPAEAGRTRLNEIIYQVGRTGAVTPVALLDPVPLAGTVVKRASV
HNANQIAALDLRLGDMVFVEKGGEIIPKITGVDLLARPADAQPIVYPTTCPACGTPLVRP
EGEAHYRCPNERGCAPQLKSKLEHYVSRKALDIDGLGAETVGRFFDLGLVRTPADLYDLP
QRHAELIQLDRLGEKSVQRMTAGLEASKQVPFDQVLFGLGIRYVGETVAEKLAAHYRSID
PILNASAEELAAVPEVGGVIAESVAAWAQDPANRELVERLKAAGVQMELTGEAPQPQSDR
LNGLTFVLSGVFEQHSREELEQLIALNGGKVTGSISKKLSYLVAGDKMGPAKREKALTMK
VPIIGETDLLAMVSDGGL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacctgttctccgttcaagaaaaaatccgggcccttaccgagcgcctgcactac
ctcaaccaccagtattaccaaaacgacgtgtcggaggtgtcggaccaggagttcgaccac
ctgctccgcgagctgcaggacctcgaaaaacagtaccccgagtacgcccagcccaactcg
cccacccagcgggtgggcggcaccatcaccaagcagtttcccacggccgagcaccgctac
cccatgctctcgttggccaacacctactcggaggccgacttgcgcgagttcgacgagcgg
gtgcagcgcggcctggaaggcgccgaataccaatatgtgtgcgagttgaagttcgacggc
gtggccatgagcctgcgctacgagcagggccagctcacgcagggcgtaacccgcggcgac
ggcacccgcggcgacgtggtgaccagcaacgtgcgcaccatcaaaacgctcccgctgcat
ttgcgcgaagaccgcaacatgcccgccgacttcgaggtacgcggcgagattttcatgccg
ctgaacgtgttcaacgacctgaacgccgagcgggagcagaacggcgagccgctgctggcc
aacccgcgcaacgctgcctcgggcacgctcaagctccaggattcggcggtggtagccgcg
cgccggctgcgtttctacgcctacagctacctgagcccccgccagcgcgacttcccctcg
cacagcgccgccctggaggcgctgaaacgctggggcctgcccgtgtcggatacctggcgc
aaggccggctccatcgacgaagtgctcagctacattcacgagtgggacaagaagcgcttc
gacttgcccgtggccaccgacggcattgtgattaaggtggacgacttgcgccagcaggag
cagctgggctacacggccaaaagtccgcgctgggccattgcctacaagtaccccgccgaa
gccggccgcacccgcctcaacgaaatcatctaccaggtgggccgtacgggagccgtcacg
cccgtggccctgctcgacccggtgccgctggccggcaccgtcgttaagcgcgcctcggtg
cacaacgccaaccagattgccgcgctggatctgcgcctcggcgacatggtgttcgtggag
aaaggcggcgaaatcattcccaaaatcaccggcgtcgatttgctggcccgccccgccgat
gcccagccgattgtgtacccaactacctgcccggcctgcggcacgccgctggtgcggccc
gagggcgaggcccactaccgctgccccaacgagcggggctgcgcgccgcagctcaaaagc
aagcttgagcactacgtctcgcgcaaagccctcgacatcgatgggctgggcgccgaaacc
gtgggccgtttcttcgacctgggcctggtgcgcacccccgccgacctctacgacctgccc
caacgccacgccgagctgattcagctcgaccgcctcggggagaaatcggtgcagcgcatg
acggccggcctcgaagccagcaagcaggtgcccttcgaccaggtgttgttcggccttggc
atccgctacgtgggcgaaaccgtggccgaaaagctggccgcgcactaccgcagcatcgac
ccgatactcaacgcctcggccgaagagttggccgctgtgcccgaagtaggcggtgtcatt
gccgaaagcgtggcggcctgggcccaagacccggccaaccgcgaactggtggagcgcctg
aaagcggccggcgtgcagatggagctgaccggcgaagccccgcagccgcaaagcgaccgg
ctcaacggcctgacctttgtgctgtcgggcgtgtttgagcagcacagccgggaagaacta
gaacagctgattgcgttgaacggcggcaaagtcacgggctccatcagcaagaagctcagc
tacctggtggccggcgacaagatgggcccagccaaacgcgaaaaagccctgacgatgaag
gtgcccatcattggcgaaaccgatttgctggctatggtgtcggacggcggcttgtag
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integrated database retrieval system
