Halomonas sp. TD01: HPTD01_396
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Entry
HPTD01_396 CDS
T08977
Name
(GenBank) DNA ligase (NAD(+)) (EC
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03030
DNA replication
hbp03410
Base excision repair
hbp03420
Nucleotide excision repair
hbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPTD01_396
03410 Base excision repair
HPTD01_396
03420 Nucleotide excision repair
HPTD01_396
03430 Mismatch repair
HPTD01_396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbp03032
]
HPTD01_396
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_396
Enzymes [BR:
hbp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPTD01_396
DNA replication proteins [BR:
hbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPTD01_396
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPTD01_396
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPTD01_396
MMR (mismatch excision repair)
DNA ligase
HPTD01_396
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPTD01_396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
CAH1041918
LinkDB
All DBs
Position
HaloTd01MainCirc:complement(400167..402230)
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPEKKLLEEISQLRADLDDANYRYYVLDNPKLTDADYDRKLQRLKQLESEYPHLVSPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECQVGDIEFSCEPK
LDGAAVSLVYEQGILVSGATRGDGRTGEGITSNLRTLKSVPLKLLGDNIPTLLEVRGEVI
MRHAGFEALNDRAREEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQVARIDIANI
ADSALGNSIMTTHSQQMERLKAWGFRSSAELRTVSGPELVADYCEQLGEKRDQLGYDIDG
VVIKVNDLRHQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPV
TVAGVTVSNATLHNADEITRLGVMVGDTVAIRRAGDVIPQVVRVDIDKRPAQARAITFPE
HCPVCGSDIERLEGEAVARCSGGLYCAAQRKEALKHFVSRKALDVDGLGEKLIEQLVELD
WVKTPADLFRLTVEQLQTLPRMGEKSSTNLVNALDKAKHTTLARFIYALGIREVGEATAA
NLASHFGTLQALQEADQAALEAVNDVGPIVAAHVHTFFRQTHNQETIVALRDAGITWQES
VVTQGPTPLKGQTWVLTGTMDTMTRDDGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKL
TKAEQLGVEVIDEATFIERLAAWEQSE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgagaaaaaacttctggaagagattagccagctgcgcgctgatcttgat
gatgcaaactaccgctactatgtattagacaaccctaagctgaccgacgcagattacgac
cgcaagctgcagcggttgaagcaattggagtctgaatacccccacttggtctcgccggat
tcccctactcagcgcgtgggggctgcaccagcggaaggttttcctgaagtcgcccacgcg
atcccgatgctttcattggataacgcttttagccgcgatgatattacggcatttgccgag
cgagtggctgagcgtttggagtgtcaggtcggagacattgaatttagctgtgagccaaag
cttgatggtgccgcggtatcgttagtatatgagcagggcatactggttagcggcgcaacc
cgtggcgatggccgtactggggaaggtattacatcgaatttgcgcactttgaagtccgtt
ccgctaaagctattgggcgacaatattccaacgttattagaagtacgcggcgaagtcatt
atgcgtcatgcaggctttgaagcgctcaatgatcgagccagggaagaaggcagtaaggtc
ttcgctaacccgcgtaatgcggcggctggcagcctacgccagcttgatccgcgaattacc
gcaacacgcccattagagtttcatgcttatcaagtcgcccgaattgatatagcgaatatt
gccgatagcgcactcggcaatagcataatgacaacccatagccagcaaatggaaaggctc
aaagcgtggggctttcgctccagtgcggagcttcgtactgtcagtggccctgagttggtg
gctgactactgcgagcaactgggtgaaaagcgagaccagttgggttacgacattgatggc
gtagtgatcaaagttaacgacctgcgccaccagcgggagcttggttttgtggcgcgtgcg
ccacgttgggcagtagcgtttaagtttcctgcccaggaagaagttacgacgcttaacgat
gtagagtttcaggtaggccgtactggcgcgattaccccggtcgctaggctagagcccgtc
accgttgccggtgttacggtatcgaacgccacgctgcataacgctgatgaaatcacccgt
ttaggtgtgatggttggtgatacggtggctattcgccgcgcgggcgacgtgatccctcaa
gtggtgcgggtagatatcgacaagcgccctgcgcaggcgcgtgcgattacctttcctgag
cactgcccggtgtgcggttcggatattgaacggctagaaggcgaagcggtagctcgttgc
tcaggtgggctttattgtgccgctcagcgtaaagaagcgctaaagcatttcgtcagccgt
aaggcgttagatgtggatgggttgggcgaaaagctgattgaacaattggtggaactggac
tgggtgaaaacaccggcggatttgtttcgcttaaccgttgaacagcttcagacgctaccg
cgcatgggggaaaaatcctcgaccaacttggtaaatgcgctggataaggccaagcacacc
acgctggcacgttttatttacgctttaggtattcgcgaagtaggcgaagccacagcggca
aatttagccagccacttcggtacacttcaggccctgcaagaagctgatcaagcggcgcta
gaagcggttaatgatgttggtccgattgtggccgctcatgttcacacttttttccgccaa
acgcacaatcaggaaacgattgtagcactgcgcgatgctggtattacctggcaagagagt
gtagtgactcaaggcccgacgcccttgaaggggcagacctgggtgctcaccggcacgatg
gacaccatgacccgcgatgatggcaaggctcggctgcaagcgctaggtgctaaggtggcc
ggcagtgtttccaagaaaaccacctgccttgtggcaggcgaggccgcaggcagtaaatta
accaaagcagagcagctgggcgttgaggtgatcgatgaagccacctttatcgagcgtcta
gctgcctgggagcagagtgaatga
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