Halotia branconii: QI031_12685
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Entry
QI031_12685 CDS
T09011
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbq
Halotia branconii
Pathway
hbq03030
DNA replication
hbq03410
Base excision repair
hbq03420
Nucleotide excision repair
hbq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QI031_12685 (ligA)
03410 Base excision repair
QI031_12685 (ligA)
03420 Nucleotide excision repair
QI031_12685 (ligA)
03430 Mismatch repair
QI031_12685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbq03032
]
QI031_12685 (ligA)
03400 DNA repair and recombination proteins [BR:
hbq03400
]
QI031_12685 (ligA)
Enzymes [BR:
hbq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QI031_12685 (ligA)
DNA replication proteins [BR:
hbq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QI031_12685 (ligA)
DNA repair and recombination proteins [BR:
hbq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QI031_12685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QI031_12685 (ligA)
MMR (mismatch excision repair)
DNA ligase
QI031_12685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QI031_12685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGV28269
LinkDB
All DBs
Position
2902444..2904486
Genome browser
AA seq
680 aa
AA seq
DB search
MTQIKSEIKQIEELRQLLQQASYAYYVLDAPIMEDAVYDRLYRELQQMEIEHPELVRLDS
PTQRVGEKPAIHFTSVRHNIPLYSLENAFDIDELQSWEQRWRRQTPTTDAVEYVSELKID
GSAIALTYENGILVRGATRGDGIMGEDITQNVRTIRSIPLRLNLGDLENLEKVEVRGEAF
LPLDVFRQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLDFFAYTLHISGMDDA
SIANTQWEALELLEKMGFRVNPNHKLCASLAEVAEYYQYWDTERLNLPYMTDGVVVKLNS
FKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAQMRPVQLAGTTV
SRATLHNSDRVAQLDIRIGDTVIVRKAGEIIPEVTRVLTELRPPDSQPFVMPTHCPVCNQ
PVVRESDEAVTRCVNASCPAILKGEIEHWVSRDALDIKGVGEKLVHQLVDKNLVHSVADL
YDLTADQLCALERMGKKSAEKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTQKYPT
VDQLVTAKQSDIADIYGIGAEIAQSVYQWFRINANQTLVQRLQLTGLQFVATEDTTVSNS
NQKFAGKTFVITGTLPTLKRDEAKALIQKAGGKVTDSVSKKTDYLVVGADAGSKLEKAQT
LGINQLNETQLLEILEDSQN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacacagattaagtccgaaataaaacaaatagaagaactacgccaactgttacaacaa
gccagctatgcatattacgttttagatgcgccaattatggaagatgcagtgtacgatcgc
ctgtatcgggaattgcaacaaatggaaattgagcatccagaattagtcagacttgatagt
cctacccagcgcgtgggtgagaaaccagcaatacattttacctcggtacgacacaacatc
ccactttatagtctagagaatgcctttgatattgatgaattgcaaagttgggagcaacgc
tggcggcgacaaacacccacaacagatgctgtagaatatgtatctgagctaaaaattgat
ggttctgcgatcgctcttacctacgaaaatggcattctagttaggggcgcaactaggggt
gatggaatcatgggtgaagatattacccaaaatgtgcggacaattcgctcaattccgttg
cgcttgaatttaggtgatttagaaaacttggaaaaggtagaagtccgaggcgaggcgttt
ttaccgttggatgtgtttagacaaatcaacgaggaaaggcaaaaagcaggtgaacagttg
tttgctaatcctcgcaatgcggcggctggtacactcagacaattagattcgcgcattgta
gccaagcggcgattagatttttttgcctacacactacacatctctggtatggatgatgcc
agtattgctaatacccagtgggaagcgttggagttattggaaaagatgggttttcgggtc
aacccaaaccataagctatgtgcttcactagctgaagtggcggaatattatcaatactgg
gatacggaacggctgaatctaccctacatgaccgatggggtagtagtaaagctaaattct
tttaaattacaagaacagttaggatttacccaaaaattccctcgctgggcggtggcgttg
aaatacccagccgaagaagcgcctacccgcgtcgaaaatattgctgtcaatgtcggtaga
acaggggcgttgacacctttagcgcaaatgcgtccagtacaattagcaggaacgacagtt
tctcgtgctactttacacaatagcgatcgcgtcgctcaattagatatccgcattggtgat
actgtaattgttcgtaaagctggggaaattatcccagaagtgaccagggtattaacagaa
ctgcgtccccctgatagtcaaccctttgtaatgcccacccattgcccagtctgcaatcaa
ccagtggtgcgagagtcagatgaagcagtaactcgctgtgtaaatgcttcttgtccagct
attctcaaaggagaaatagaacattgggtcagccgtgatgctttagatattaaaggcgta
ggcgaaaagctggtgcatcaacttgttgataaaaacttagtgcattctgtggctgatttg
tatgatttgacagcagaccaattatgtgcattagaaagaatggggaaaaaatcagcagag
aaattaatagatgcgatcgctcaatcaaaaaaccagccctggtcaagagtattgtatggt
ttaggcatccgtcatgttggtagtgtgaatgcccaattattgacccagaagtatcccaca
gtagaccaattagtgacagcaaaacaatcagatattgcagatatttacggtattggtgca
gaaattgctcaatctgtataccaatggtttcgcattaatgccaatcaaaccttagttcag
cgtttgcaactaacagggttacaatttgttgccacagaagacacaacagttagtaatagt
aatcaaaagtttgcgggtaagacttttgtgattacaggtacattgccaaccttaaagcga
gatgaggctaaggcattaattcaaaaagctggtggtaaagtaactgattcagtcagtaaa
aaaaccgattatttagtggtaggagcagatgcaggttctaagttagaaaaagcgcagact
ttaggaattaatcagttaaatgaaacccagttattagaaatattagaagactcacaaaac
taa
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