KEGG   Hevea brasiliensis (rubber tree): 110645062
Entry
110645062         CDS       T05150                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
hbr  Hevea brasiliensis (rubber tree)
Pathway
hbr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110645062
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hbr03021]
    110645062
Enzymes [BR:hbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110645062
Transcription machinery [BR:hbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110645062
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 110645062
NCBI-ProteinID: XP_021653762
LinkDB
Position
Unknown
AA seq 1454 aa
METDLSEEQQLPSALLTAITFGVSTETEKEKLSVLAIDAVSQVNDPKLGLPNPSSQCSTC
GSKDLKSCEGHFGVIKFPFTILHPYYLSEVVQILNKVCPGCKSIRKETKRTNSKSRQNLV
KGCKYCVANSIGWYPTMRFSVSSEEIFRKNVIIAKIVERPPQKSQKKGLKKRLAADYWDI
IPKDEQEEENIVRPNQRVLSHAQVRHLLKDVDANFIRKFVKRTDSIFLNCFSVTPNCHRV
TEVTHAFSSGQRLSFDERTRAYKKLVDFRGIAKELSFRVLDCLKTSKINPDNSVNNDDVI
AMQRKINDSASNPSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKLSEVGIPCHIAERLQIS
EHLTAWNWEKLNTCCEIRILEKGDMHVRREGNLVRIRRTKELRTGDIIYRPLNDGDIVLI
NRPPSIHQHSLIALSVKVLPVTSVLAINPLCCSPFRGDFDGDCLHGYVPQSVDTRVELSE
LVALDKQLTNAQSGRNLLSLSQDSLVAAHLVMEDGVFISLFQMQQLQMFCPHQLSPAIIK
APLPNGCVWTGKQLISMLLPRGLDHDFPSNNVCIRDGELISSEGSFWLRDTDGNLFQSLV
KHCQSQVLDFLHTAQEVLCEWLSMRGLSVSLSDLYLCPDSNSWNNMMSEVFCGIQDAVHT
CNVKQFMVDSCQDFLAGNGEDDQYAMDFDVERLCYDKQRSAALSQASVDAFKHVFRDIQS
LAYKYASKDNALMAMFKAGSKGNLLKLVQHSMCLGLQHSLVPLPFRMPHQLSCVAWNKQK
DDNATECAKCFIPSAVVEGSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFM
RDIHAAYDGTVRNAYGNQLVQFSYNNDTDMSAPSFSPGHIFDNCDGIGGQPVGSLAACAI
SEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSVSLFLSEKLGRQRHGFEYAAL
EVQDYLERILFSDIVSISRIMFSPQSEKNEIKTRFSPWVCHFHVHKEIMKKRRLKVQSII
DTLYNRCNSENNLPNVQITCKDCSVADNQREKEDMLCITVTIIEKSRNSSVQLDTIQDLM
IPFLLETVLKGLMEIEKVDILWNDRPRVPKLHKHPYGELYLRVSMSGSSDKTRLWNLLVD
YCLPIMDMIDWTRSHPDNIRDFCLAYGIDAGWKFFLNNLASAISDVGKSVLPEHLLLVAN
CLSVTGEFVGLNAKGWKRQREHASVLSPFVQACFSSPGNCFIKAAKAEIVDDLRGSLDAL
SWGKIPSIGTGQFDIVFSGKEYKLSKPVDVYDLLGSQMSTDEQNNEFEVPFAQSYKSDKY
SAQFVYKTPYDPKRTLESLRRLFTYNDIHRLSQALSKILNKYPVDHQLNETDKCTLMMAL
HFHPRRDEKIGSGAKDIKVVNHPEYQDSRCFSLVRTDGTNEDFSYRKCVHGALEIIAPQK
ARRYQEKYLQSRNL
NT seq 4365 nt   +upstreamnt  +downstreamnt
atggagactgatttatctgaggagcagcaattgccatctgctctactaacagccataaca
tttggtgtttcaactgagacagaaaaggaaaagctttcagttctagctattgatgcagta
agtcaggtcaatgatccgaagttgggactaccaaatccatcttctcaatgctctacttgt
ggatccaaagatttaaaatcctgtgaaggtcattttggggtcattaaatttcctttcaca
atactgcatccttattacctgtctgaagttgtccagattttgaacaaagtttgcccagga
tgtaaatctattaggaaagaaaccaagcggactaattcaaaatctagacaaaatctggtt
aagggttgcaaatactgtgttgcaaattcaattggttggtacccaacaatgaggttctct
gtttcttcagaagaaatcttcaggaaaaatgtaattatagcgaaaattgttgaaagacca
ccacaaaagtcccaaaagaaaggactgaagaaaaggttggctgctgactattgggatatt
attccaaaagatgaacaagaagaagaaaacattgtgagaccaaaccaaagagttctatca
catgcacaggttcgtcatctgttgaaagatgtcgatgcaaatttcataagaaagtttgtt
aaaaggacagattcaattttccttaactgtttctctgtaacaccaaattgtcatcgtgtg
acagaagttacgcatgcattttctagtggccagcgattgtcttttgatgaacggactagg
gcttacaaaaaacttgttgatttcagagggatagctaaagaattgagcttccgtgttctt
gactgcctgaaaacttctaagataaacccagacaattcagtaaataatgatgatgtcatt
gccatgcaaaggaagataaatgattctgcctccaatccatctggtttgagatggattaaa
gatgttgttctcggtaaacggaatgataattcattccgaatggtggtggttggtgatcct
aatattaagctgagtgaagttggtataccctgtcatattgcagaaaggttgcaaatttca
gaacatctgacagcttggaattgggagaagttgaatacttgttgtgaaatacgcattctt
gagaagggcgatatgcatgttcgcagggaaggtaatcttgttcgtatccgtcgtacgaag
gaactccgtactggggacatcatttacaggcctctaaatgatggagatattgttttgatc
aataggcctccatcaatacatcaacactcacttattgctctctctgttaaagtccttcca
gtgacctcagttcttgcgatcaatccgctctgttgctccccatttcgtggagattttgat
ggtgattgcctacatggctacgttcctcaatcagttgacaccagagttgagctctctgag
cttgttgctttagataagcagttaactaacgcacagagtggcaggaatctcctctcgctc
agtcaagatagtttagttgctgctcatttggtcatggaagatggagttttcataagccta
ttccaaatgcaacagctgcaaatgttttgtcctcatcagttgtctccagctataataaaa
gctcctttacctaatggctgtgtttggactggaaagcaactaattagcatgctcctacct
agaggtttggatcatgattttccttcaaataatgtttgcattcgtgatggggagcttatt
tcttctgaaggatccttttggctacgtgacactgatggtaatcttttccaaagcctcgtc
aaacattgccagagtcaagttcttgactttttgcatactgctcaggaagttctttgtgag
tggttgtcgatgaggggcttaagtgtctcactctctgatttgtacctctgtcctgactca
aactcatggaataacatgatgtctgaagttttttgcggaattcaagatgcagttcacaca
tgtaatgtaaaacagttcatggtggattcttgtcaagatttccttgctggaaatggtgaa
gatgatcagtatgccatggattttgatgtagagcgcttgtgttatgataagcagagatct
gctgcactcagtcaggcttctgttgatgctttcaagcatgtgtttcgtgatattcaaagt
ttagcctacaaatatgcaagtaaagacaatgcattgatggccatgtttaaagcaggaagc
aagggtaatctactgaaattagtccaacatagtatgtgtctaggtttgcaacattcactt
gttccattgccctttagaatgcctcaccaactctcttgtgttgcttggaataaacaaaag
gatgacaatgctactgaatgtgccaagtgttttatcccatctgctgtcgttgaaggttct
tttttaacaggcttgaatcccctagaatgttttgtacattcagtaacaagtagagatagc
tctttcagtgacaatgctgatcttcctgggactttaactcgaagacttatgttcttcatg
cgtgatattcatgctgcatatgatggaacagtgagaaatgcttatgggaatcaacttgtt
cagttctcctataataatgacacagacatgtctgcaccaagctttagccctggccatatc
tttgataattgtgatgggataggtggccaacctgtgggttcattggctgcttgtgccatc
tctgaagctgcttacagtgctttggatcaaccaatcagtctacttgaaaaatcacctcta
ctaaatcttaagaatgtgctggaatgtggtctgaaaaagagtaatgctcacaaatccgtg
tcactatttttatctgagaaacttggaaggcagagacatggttttgagtatgctgcattg
gaagttcaggactatttggagagaatactgttttcagatattgtttctatttcaaggata
atgttctctccgcagagtgagaagaatgagatcaagacacgtttcagtccttgggtttgt
cattttcatgtacacaaggaaattatgaagaagagacgtctaaaggtgcaatctattata
gataccctttataatcggtgtaattcagaaaacaatctgccgaatgtgcaaataacatgc
aaggactgttctgtggctgacaatcaaagggaaaaggaagatatgttgtgtataactgtt
actataattgaaaagtccaggaattcatctgtgcaattggacacaattcaagacctgatg
attccattccttcttgaaacagttttaaaaggattaatggagatagagaaggtggatatt
ttatggaatgataggccaagggtaccaaaattgcataagcatccttatggtgagctatac
ttgagggtttctatgtcgggcagctcagataaaacaagactctggaacttacttgtggat
tactgtctcccaataatggatatgattgattggacacgcagtcatccagataatatacgt
gatttctgtttggcatatggcatagatgctggatggaaatttttcctcaataatttggcg
tctgcaatatctgatgttggcaagagtgtacttcctgaacatttgcttcttgttgcgaat
tgtctatcagttacaggagagtttgttggcctaaatgcaaaaggctggaaacggcaaaga
gagcatgcgtcagttctttcaccatttgtgcaagcatgcttttccagtcctggtaattgc
tttatcaaagctgccaaggcagaaattgtggatgatcttcgagggagcttggatgctttg
tcatggggaaagattccttctattgggactggacagtttgatattgtattctctgggaag
gaatacaagctttcaaagcctgtggatgtctatgaccttctgggtagccaaatgagtact
gacgagcagaataatgagtttgaagtgccttttgctcagagctataaatctgacaaatac
agtgcccagtttgtgtacaagacaccttatgaccctaaacgaacattggaatctttgaga
aggttatttacatataatgatattcatagactctcccaagcactgagcaaaatcttgaat
aagtaccctgtagatcaccaattaaatgagactgacaagtgtaccttgatgatggcctta
cattttcatcctcgacgagatgagaaaattggatctggagccaaagatattaaggttgta
aatcatccagaatatcaagattctcgctgcttttctctggttagaacagacgggacaaat
gaggacttctcatatcgcaagtgcgtccatggtgctcttgagatcattgcccctcaaaag
gccagaaggtatcaagaaaaatatttacaaagccgtaatctgtag

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