Humisphaera borealis: IPV69_25215
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Entry
IPV69_25215 CDS
T07075
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbs
Humisphaera borealis
Pathway
hbs03030
DNA replication
hbs03410
Base excision repair
hbs03420
Nucleotide excision repair
hbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPV69_25215 (ligA)
03410 Base excision repair
IPV69_25215 (ligA)
03420 Nucleotide excision repair
IPV69_25215 (ligA)
03430 Mismatch repair
IPV69_25215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbs03032
]
IPV69_25215 (ligA)
03400 DNA repair and recombination proteins [BR:
hbs03400
]
IPV69_25215 (ligA)
Enzymes [BR:
hbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IPV69_25215 (ligA)
DNA replication proteins [BR:
hbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IPV69_25215 (ligA)
DNA repair and recombination proteins [BR:
hbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IPV69_25215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IPV69_25215 (ligA)
MMR (mismatch excision repair)
DNA ligase
IPV69_25215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IPV69_25215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
Zn_ribbon_8
DNA_pol_lambd_f
OB_DPOA2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
QOV89458
UniProt:
A0A7M2WV96
LinkDB
All DBs
Position
complement(6699518..6701884)
Genome browser
AA seq
788 aa
AA seq
DB search
MAASVEKKIADLRQQINHHNQLYYQQARPEISDREFDKLLQELIDLEKQHPELLTADSPT
QRVGGDVQTALKPVSHAVPMMSIENTYSEQEVRAFDERVKKSLDDAQPAYVLEPKIDGTS
ISLRYEEGVLVLAATRGRGNVGDDVTINARTIGAIPLRLTSSEAHTVPAIVEVRGEVYMD
NADFQLVNKEIVADGEAPYANPRNLTAGTLRRLDPKIVARRKLRFLAHGLGQVEPNPARS
YWEWMQLLRAWGLPLPKEVKHVANVDEAIEQIHAFEKIRPTLPYMTDGIVMKVDAFDQRD
RLGATSKAPRWVIAYKYETEQQPTILNSVDWQVGKGGSLTPVGRVEPVFIGGVTVSNVTL
HNIDQIRKLDLHLGDTVVIERAGEVIPYLVQAIKEKRPAGAKTVGEPTQCPTCQTDVERE
ALPEDTAAYRCLNHECSEYFERVRVKKAKLPAACPICAGKIEVLASGIDLYCPNQDCPDQ
IKGRLLWYCNRSQMDIEGVGDKLVEQLVDKGLVRTFADLYQLKAEDLSGMTSEVEQGEKL
VTRTVGEKVANKVVENIQKSKGQKLERLLAGLGIHHVGNRVAHVIAGAFGSLDAIASATA
EQLSAVNEIGDVIADSVRDFFHNESSLAVVRALQAAGVDPKQDVKKAADVASQLFAGKTI
VVTGSMKTMTRQQIEELIVQLGGKASGSVSKKTSFVVAGEEAGSKLEKARELGVEVLTEE
QFIERARAAAPVDGAAAAVETPAPTQSSSPEPPKPERPKSVRPKSGRSKSEGSSTKAAKN
ADETDSLF
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatccgtcgaaaagaaaatcgccgacctgcgacagcagatcaaccatcacaac
cagctctattaccagcaggcccggccggagatttctgaccgcgaattcgacaagctcctt
caggaactgatcgatctcgaaaagcagcacccggagcttctgaccgccgattcgccgacg
cagcgtgtcggtggcgacgtgcagacggcgctcaagccggtgagccacgccgtgccgatg
atgagcatcgagaacacctactcggagcaggaggtgcgcgccttcgacgagagggtgaag
aaatcgctcgacgatgctcagccggcctacgtactggagccgaagatcgacggcacgtcg
atcagcctgcgatacgaggaaggcgtgctcgtgctggcggcgacgcgcggccggggaaac
gtcggcgatgacgtcaccatcaacgcccgcacgatcggcgcgatcccgctgcggctgaca
tcgtccgaagcgcatactgtaccggcgattgtcgaagtccgcggcgaagtctacatggac
aacgcagactttcagttggtgaacaaggagatcgtcgccgacggcgaagcgccgtacgcc
aacccgcgaaacctcaccgcaggcacactgcgccggcttgaccccaagatcgtcgccagg
cgcaagctgcggttcctggcgcacggcctggggcaggtggagccgaacccggcaagaagc
tactgggaatggatgcaactgcttcgggcttggggattgccgctgccgaaggaagtaaag
catgtcgcgaacgtggacgaggcgatcgaacagatccacgcgttcgaaaaaatccgcccg
acactgccctacatgaccgacggcatcgtcatgaaggtggacgcgttcgaccagcgcgac
cgccttggtgcaacgagcaaagcgccgcgctgggtgattgcctacaagtacgagaccgag
cagcagccgaccatcctgaacagcgtcgactggcaggtgggcaagggcggcagcctgacc
ccggtcggccgcgtcgagccggtcttcatcggcggcgtcacggtcagcaacgtcacgctg
cacaacatcgaccagattcgaaagctcgacctgcacctcggcgatacggtcgtcatcgag
cgtgccggcgaagttattccctatctcgtgcaggcgatcaaagagaagcggccggcgggg
gcgaagaccgttggcgagccgacgcagtgccccacctgccagacagatgtcgaacgcgag
gccttgccggaagacacggccgcttaccggtgtctcaaccacgaatgcagtgagtacttc
gagcgagttcgcgtgaagaaggcgaagctgcccgcggcctgcccgatttgcgcagggaag
attgaggtcttggcgagcggcatcgacctgtattgccccaaccaggattgccccgaccag
atcaaaggccggctcctgtggtactgcaatcgcagccagatggatattgaaggcgtcggc
gacaagctggtggagcagcttgtggacaagggcctggttcgcacattcgccgacctgtat
cagctcaaagccgaggacctttccggcatgacgtcggaggtcgaacagggggagaagctc
gtgacgcggaccgtcggtgagaaggtcgcgaacaaggtggtcgagaacattcagaagagc
aaagggcagaagctcgaacgattgctggcgggattgggcattcaccacgtcggcaaccgc
gtggcgcacgtcatcgccggcgcgttcggcagtctcgatgcgatcgcgtcggcgacggcc
gagcaactgtcggcggtaaacgagatcggcgatgtcatcgccgacagcgttcgcgacttt
tttcataacgagtccagcctggcagtcgtcagggccttgcaggcggcgggggtcgatccg
aagcaggacgtcaagaaggccgccgatgtcgcgagccagctctttgccggcaagacgatc
gtcgtcaccggttcgatgaagacgatgacgcgacagcagatcgaagaactgatcgttcag
ctcggcggcaaggcatccggcagcgtgagcaagaagacgagtttcgttgtcgccggcgaa
gaggccggcagcaagctcgaaaaggcccgcgaattgggcgttgaagtgctgaccgaggag
cagttcatcgagcgcgcccgggccgcggctcctgtcgatggcgcggcggcggcggtcgag
acgccggccccaacgcagagttcatcccctgagccgccgaagcccgagcggccaaagagc
gtgcggccgaagtccgggcgatccaagtctgaagggtcatccaccaaggcagcgaagaac
gccgacgagacggattcgctcttctga
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