Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0990
Help
Entry
HCBAA847_0990 CDS
T02494
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03030
DNA replication
hcb03410
Base excision repair
hcb03420
Nucleotide excision repair
hcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCBAA847_0990 (ligA)
03410 Base excision repair
HCBAA847_0990 (ligA)
03420 Nucleotide excision repair
HCBAA847_0990 (ligA)
03430 Mismatch repair
HCBAA847_0990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcb03032
]
HCBAA847_0990 (ligA)
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_0990 (ligA)
Enzymes [BR:
hcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HCBAA847_0990 (ligA)
DNA replication proteins [BR:
hcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HCBAA847_0990 (ligA)
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HCBAA847_0990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCBAA847_0990 (ligA)
MMR (mismatch excision repair)
DNA ligase
HCBAA847_0990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCBAA847_0990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
SeqA_N
Motif
Other DBs
NCBI-ProteinID:
BAM32228
UniProt:
A0AAI8MMB1
LinkDB
All DBs
Position
954910..956865
Genome browser
AA seq
651 aa
AA seq
DB search
MTQQEYSSNIQKLTKMAYHYYVLDDPIATDSQYDELYHQVLNFERQNPILISPNSPTQRV
GGTPLESFSKNSHIERMWSLEDVFNQAEMQEWCERIYKSYPHSHFTCSPKFDGASLNLLY
RDGILVSATTRGDGIVGELVTSNARTIQSIPLSIDYKGEIEIRGEVVIAKDDFEKINNER
LEQNLSLFANPRNAAAGSLRQLDSKITAQRKLRFMPWGIGAGLSQFGSFYEALQKITDFG
FAPVPFLTHCEGSDDIMQMYKILISKRDDYPIMLDGMVIMLDEIEIQQRLGWTIKAPRFA
CAFKFPAVEKSSKILDITLQVGRTGIITPVAELEPVEIEGAMIARATLHNFSEIERKDIR
INDEVIIIRSGDVIPKIIKPITALRDGTQIPITKPTHCPVCRQELLIEEIFIKCQNLSCE
ARVIESIIHFASKKALNIDGLGEKIVIQLFENGLIQSILDIYALEESQLLALEGWKEKRA
KNLIVAIQNTIGVELWRFINALGIEHIGEGASKRLAQSFGRDTFSADFQQILGLDGFGEE
MAYSLVEFNHANKELIAKLLEIISPKIEQIKLDSGHIFYGKSIVLTGTLNKPRDEIVEML
ESKGAKISSSVSKKTDFVIYGEKAGSKLEKAQNLGVKTLSEEEFMACMQES
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcaagaatacagctcaaacattcaaaagctcacaaaaatggcgtatcattac
tatgtgcttgatgacccaatcgccacggatagccaatatgatgagctgtatcatcaagtc
ttaaactttgaaaggcaaaacccaatattgattagcccaaactccccaacccaacgcgta
ggtggcacacctttagaatcttttagtaaaaattcccatatagagcgtatgtggagcttg
gaagatgtctttaatcaagcggagatgcaagagtggtgtgaaaggatttataaaagctat
ccgcattcacactttacctgttcgccaaagtttgatggggcaagtctcaatctcttatat
cgtgatggaatcttagtgagtgcgactacaaggggcgatggcattgtaggagagcttgta
acgagcaatgctaggacgattcaaagcattcctttaagcattgattataaaggtgagatt
gagatacgcggagaagttgtgatagctaaagatgattttgaaaagataaataacgagcga
ttggagcagaatctaagcctttttgctaacccacgaaacgccgctgctggcagcctaaga
cagctagattctaagattacggctcaaaggaaactccgctttatgccttgggggattggg
gcggggcttagtcaatttggtagcttttatgaagcgttacaaaaaattacagattttggc
tttgctcctgtgcctttccttacgcactgcgagggaagtgatgatattatgcagatgtat
aaaatacttatatcaaaacgcgatgactatcccataatgcttgatggtatggtgataatg
ctagatgaaatagagattcaacaaaggctgggctggacgattaaagctccgcgttttgcg
tgtgcgtttaagtttccagcggtggagaaaagctctaagattctagatattaccttgcaa
gtgggacgcacggggattatcacacctgtggcggaactagagcctgtggagattgaaggg
gcgatgattgctcgtgcgacactgcataattttagcgagattgaacgcaaggatatacgc
ataaatgatgaagtgattattatccgcagtggcgatgtgatacctaagattattaagcct
ataactgcgttgcgtgatggcacacaaatccctatcacaaagcccacgcattgccctgtt
tgtaggcaggagctattgattgaagagatttttatcaaatgtcaaaatttgagctgtgaa
gcacgagtgatagaatctattatccattttgcttcaaaaaaagcactcaatattgatggg
cttggcgaaaagattgtaattcagctttttgaaaatggcttaatccaaagtattttagat
atttatgctttagaagaatctcagcttttagcccttgagggctggaaagaaaaaagggcg
aaaaatcttattgtagccatacaaaataccataggcgtggaactatggcgttttatcaat
gcacttgggattgagcatataggcgagggggcaagtaagagattagctcaaagctttggc
agagatacttttagtgcggattttcagcagattctaggtcttgatggctttggggaagag
atggcgtattcacttgtggagtttaaccacgcaaataaggagcttatagcaaaattgctt
gaaattattagtccaaaaattgagcagataaagcttgatagtgggcatattttttatggc
aaaagtatcgtgctaacaggcacattgaataagccacgagatgagattgttgaaatgcta
gaatctaagggggcaaagataagctcaagtgtcagtaagaagacggattttgtgatttat
ggagaaaaggcagggagcaaacttgaaaaagcacagaatctaggtgttaagactttgagt
gaggaagagtttatggcgtgtatgcaggaaagttaa
DBGET
integrated database retrieval system
