Hemicordylus capensis (graceful crag lizard): 128328019
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Entry
128328019 CDS
T08891
Symbol
THBS1
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04115
p53 signaling pathway
hcg04145
Phagosome
hcg04148
Efferocytosis
hcg04350
TGF-beta signaling pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128328019 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128328019 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
128328019 (THBS1)
04148 Efferocytosis
128328019 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
128328019 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
128328019 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128328019 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcg04131
]
128328019 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128328019 (THBS1)
Membrane trafficking [BR:
hcg04131
]
Endocytosis
Phagocytosis
Opsonins
128328019 (THBS1)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128328019 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
Laminin_G_3
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128328019
NCBI-ProteinID:
XP_053113505
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All DBs
Position
1:68615602..68642473
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AA seq
1200 aa
AA seq
DB search
MALAGGLFLLLMLGAYASNRIPESGDDNSVFDLFELIGFGRKGAARKAAGVYLTKGPEIS
SGAYRIEDANRIPAIPDHKFQDILDAIQAEKGFILLANLRPLKKSPGTLLAVERKDNSGY
VFKLVLNGKAKTLDLSVFPKEGNQTLVSVEDVELPNGQWNNITLLVQEDQAQLYVGCEKM
VNAELEIPVQNIFTRDLASSARLRIAKGGVNDNFQGVLQNVRFVFGTTLEAILRNKGCES
STRTIIKLDNPINGSSPAIRTNYIGHKTKDIQAICGFSCDELTNVFVELRSLRSLVTTLQ
DSLVKVTTKYDELGGSKVHISPGACIHNNAVYQNTDEWTTDTCTTCTCQNSVVICHKVSC
PIMPCSNATVPDGECCPRCWPSDYAEDIWSPWSEWTTCSVTCGNGIQQRGRSCDRLNHPC
EGSSIQTRTCNMRECDKRFKQDGSWSHWSPWSSCSVTCGSGVITRIRLCNSPLPQMGGKE
CEGEARETKSCQKDPCPINGNWGPWSPWDICPVTCGGGIQKRGRLCNNPEPQFGGKDCIG
DAIDTQICNKQDCPIDGCLSNPCFAGAKCTSFIDGSWKCGACPAGYHGNGIKCRDIDECQ
EVPDACFFFGGVHRCENTEPGYHCQPCPPRFTGTQPFGRGIENAIANKQVCKPRNPCTDG
TNNCNKNAKCIYLGHFSDPMYRCECKPGYAGNGVICGEDTDLDGWPNENLICVANATYHC
NKDNCPNLPNSGQEDYDKDGIGDACDSDDDNDNIPDDRDNCPFNYNPEQYDYDRDDVGDR
CDNCVYNHNPDQIDTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQKDTDLDGVGDQC
DNCPMEHNPDQTDSDSDRIGDKCDSNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDEKDNCRLVANPDQLDSDGDGRGDACKDDFDKDNVLDIDDICPENVDIS
ETDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDSHPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTAGQVRTLWHDPRHTGWKDFTAYRWRLSHRPKTGYIRVVMFEGKKIMA
DSGAIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRAESISAFGNRGAETHPCCRGKDYHW
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcgttagcaggcggcctctttctccttctgatgctcggggcgtatgcatcgaaccgg
attccagagtctggggatgataacagtgtttttgatctctttgagctaattggctttggt
cgcaagggagctgcacgcaaagcagcaggagtatatctgacaaaggggcctgagatctcc
agcggtgcctaccgcattgaggatgccaaccgtatccctgctattcctgaccacaaattc
caagacattctcgatgccatccaagcggagaagggcttcatcctattggctaaccttcgt
ccattgaagaagagccctggcacccttctggctgtggagcgcaaggacaactctggctat
gtctttaagttggtgctgaatggcaaggcaaaaaccttggacctgagtgtctttcccaag
gagggcaaccagactttagtgtcggtggaggatgttgaattgcccaatgggcaatggaac
aacattaccctcttagtgcaagaggatcaagcccagctctatgtggggtgtgagaagatg
gtgaatgccgagctagaaatccccgttcagaacatcttcaccagggacctggccagcagt
gccagactccgcattgccaaagggggagtcaatgacaacttccagggagtgctacaaaat
gtgcggttcgtgtttggcaccacattggaagccatcctgaggaacaaaggctgtgaaagc
tccaccaggacaattattaaattagacaaccccataaatggttccagtcctgccatacgc
acgaattacattggccacaaaaccaaagacatccaagcgatttgtggattctcctgtgat
gaactaactaatgtgtttgtagaactgcgaagtctgcgctctctggtcacaacacttcaa
gattcacttgtgaaagtgactactaaatatgatgaacttggtggcagcaaagttcatata
agtcctggagcatgcatccataataatgctgtataccaaaacaccgatgagtggaccact
gatacctgcactacatgtacctgccagaactctgtcgttatctgccataaagtgtcttgt
ccgatcatgccttgttccaatgccactgttcctgatggagagtgctgcccacgctgctgg
cccagtgactatgcagaggacatttggtctccttggtctgaatggactacttgctctgtg
acctgtgggaatgggattcagcagagaggtcgctcttgtgatcggctcaaccatccatgt
gaaggctcctccatacaaacacgcacctgcaatatgcgggaatgtgataaacgattcaaa
caggatggaagctggagccactggtccccttggtcttcctgttcagttacttgtggctct
ggagtgatcactagaatccgtctctgcaactctccacttcctcagatgggtggcaaagaa
tgtgagggagaggcaagggaaaccaaatcttgccagaaagacccttgtccaataaatggg
aactgggggccgtggtcaccctgggatatctgcccagtcacatgtggaggaggcattcag
aagcgtggtcgtctctgcaacaatcctgagcctcagtttggagggaaggattgtattggt
gatgctatagatacccagatctgcaacaagcaggactgccccattgatgggtgcctgtct
aacccttgctttgcgggagctaaatgtactagtttcattgatggttcctggaaatgtggt
gcctgccctgctggctaccatggaaatggtattaaatgcagagatattgatgagtgtcaa
gaggtcccagatgcctgctttttcttcggtggagtgcacaggtgtgagaacactgaaccc
ggataccattgccagccttgcccaccacgttttactggaacgcagccctttggtcgaggc
attgagaatgcaatagcaaacaagcaggtctgcaaaccacgtaatccatgtactgatgga
actaacaactgcaacaagaatgccaagtgcatttaccttggccacttcagtgaccccatg
tatcgttgtgaatgtaaaccaggctatgctggtaatggagttatctgtggagaagacaca
gatttagatggatggccaaatgagaaccttatctgtgttgccaatgctacttaccactgt
aacaaagataattgccccaatcttcccaattctgggcaggaagactatgataaggatgga
attggtgatgcttgtgacagtgatgatgataatgataacattccagatgatagggacaac
tgcccattcaattacaatccagagcaatacgactatgatagagatgatgttggtgaccgc
tgtgataactgcgtttacaatcacaaccctgatcagattgatacagataacaatggagaa
ggagatgcctgtgctgtggatattgatggagatggcatccttaatgaaagagacaactgc
cagtatgtgtacaatgtggatcagaaggatacagacttggatggtgttggtgatcaatgt
gacaactgtcctatggaacacaatccagatcagacggattctgactctgaccgtataggt
gataaatgtgatagcaaccaggacattgatgaagatggccatcaaaataatcttgataac
tgcccctatgtgcccaatgccaaccaagctgaccatgacaaggatgggaaaggtgacgcc
tgtgaccacgatgatgataatgatggaatccctgatgaaaaagataattgcagactagtt
gctaacccagaccaacttgactctgatggagatggacgtggagatgcgtgcaaagatgac
tttgacaaagataatgtgctagacattgatgacatctgccctgagaatgttgatatcagt
gagacagacttccgtcgatttcagatggttcctctggatcctaagggaacatcccaaaac
gatcccaactgggttgttcgtcaccaaggaaaagagctggttcagactgtcaactgcgat
cctggacttgcagttggttttgatgaatttaatgctgttgacttcagtggcacattcttc
atcaatacagaaagggatgatgactatgctggctttgtgtttggatatcagtccagtagt
cgtttttatgtagtcatgtggaagcaggtcacccagtcctactgggattcacacccaacg
aaagctcagggatattcaggtctttccatcaaagtcgtgaactccaccactggtcctgga
gaacatcttcggaatgcattgtggcacactggaaatactgctgggcaggtgcggactcta
tggcatgaccctcgtcacacaggctggaaagatttcactgcctacagatggcgtctcagt
cacagaccaaagactggctacattagagttgtaatgttcgaaggaaagaagatcatggct
gattcaggtgcgatctatgacaaaacctatgctggtggccggttaggattatttgtcttc
tctcaagaaatggtgttcttttccgatcttaaatatgagtgtcgagctgaaagcatttcg
gcatttggaaatagaggtgccgaaacacatccctgttgcagaggaaaggattatcattgg
taa
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