Hemicordylus capensis (graceful crag lizard): 128339603
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Entry
128339603 CDS
T08891
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128339603 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128339603 (LIG4)
Enzymes [BR:
hcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128339603 (LIG4)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128339603 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
128339603
NCBI-ProteinID:
XP_053139772
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All DBs
Position
1:complement(242218194..242229836)
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AA seq
929 aa
AA seq
DB search
MDWKLELPAQPCSEGMVPKGIKMSSHSPSLTVASQVPFADLCSTLERIQKCRSRPEKTKI
FKDFLDSWRKFHDALHKNEKIVTDSFYPAMRLILPQLERERMAYGIKEVMLAKLYIELLN
LPKDGKDALKLLNYRTPTGSRGDAGDFAMIAYFVLKPRCLKQGQLTIQQVNDLLDSVASN
NAAKRKDLVKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTLFSTFHADAAELHNVT
TDLEKVCRQLHDPCVSLSDVSITLFSAFKPMLAAIADVQQIEKQMNNQSFYIETKLDGER
MQMHKDGDVYKYFSRNGYDYTQQFGSSPLEGSLTPFIHNAFKNNIQNCILDGEMMAYNPT
TQTFMQKGSKFDIKRMVYDSELQTCFCVFDVLMINDEKLGHQVLSKRYDILNETFTPIVG
RMQVVLKSQASTRKEVVDALNEAIDNREEGIVVKDPMSIYKPDKRGEGWLKIKPEYVSGL
MDELDLLIVGGYWGKGLRGGMMSHFLCAVAETPLPGENPSVFQSICRVGSGYTMKELYDL
GLKLAKHWKPYRKKDPPCNILCGTEKPEVYIEPQNSVIVQIKAAEIVSSDMYKTDCTLRF
PRIERIREDKEWHECMTLDLLEQLRGKAFGKLATKHLDIDDDEPQEKKRKTLQKVKKKIG
VMDHFKAPDLSNVNKILSIFEDVEFCVMSGTGDYSKYELESKIAQYGGSIVQNPGLDTYC
VVAGTENVRVKNIISSNKHDVVRVEWLLQCFQTQMFVPWQPAFMIHMSPETKQHFACEYD
RYGDSYMVDTDKAQLKEVFSRMSKFEEKISWDVIADIEARYSWENFPLSMFRQHTIYLAP
PDKVSNSGAEINQTVLRTDILMLRFHGAKVLTQLEEGVSHVIVGRDHAQVKELKTVRRTF
NRKFKILSEQWIKDSIKTGKLQNENVYLI
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggattggaagttggaactccccgcacagccatgcagtgaaggaatggtgccaaaagga
atcaagatgtcttcccattctccttctctaactgtggcatcacaagttccttttgcagac
ctctgctcaacattagaacgaatacagaaatgcagatcacgtccagagaaaacaaaaatt
ttcaaggattttttagattcctggaggaaatttcatgatgcccttcataaaaatgagaag
attgtgacagattctttttatccagcaatgagacttattcttccacagctggaaagagag
aggatggcttatggaattaaagaagttatgcttgctaagctctatattgaattgctaaat
ttacccaaagatggaaaagatgctttaaaacttctaaattatcgaacacctactggctca
cgaggggatgctggagactttgctatgattgcatattttgtgttgaaaccaagatgtctc
aagcaaggtcaacttaccatacaacaagtgaatgatcttttagattctgttgctagtaat
aatgctgccaaaaggaaagatctagtcaagaagagtcttcttcagttaataactcagagc
tcagcacttgaacagaaatggttgattaggatgatcataaaggatctgaaacttggtgtc
agccagcaaactttgttttccaccttccatgctgatgctgcagagttgcacaatgtaaca
actgacttggagaaggtttgtagacagttgcacgatccctgcgtatctcttagtgatgtt
tctattacattgttttctgcctttaaaccaatgcttgctgctattgctgatgtacaacaa
atagagaaacaaatgaacaaccagagtttctacatagagaccaaactagatggtgagaga
atgcagatgcacaaagatggagatgtttacaagtatttttcccgaaatgggtatgattat
actcagcagtttggctcttctccccttgaaggttcattgactccattcattcataatgct
tttaaaaacaatattcagaactgtattttggatggtgaaatgatggcctacaatccaacc
acacagacgtttatgcagaagggaagcaaatttgacatcaaaagaatggtatacgattct
gagttacagacatgcttctgtgtatttgatgttctaatgattaatgatgaaaagttgggt
catcaagtgttgagcaaaagatatgacattctaaatgagacttttacaccaatagtaggt
cgaatgcaggtggttttgaaaagtcaagctagcacccggaaagaagtagtagatgctcta
aatgaagcaatagataacagggaagaaggaattgtggtaaaagaccccatgtcgatttac
aaaccagacaaacgtggggaaggatggctcaaaatcaaaccagagtatgtcagtggactg
atggatgagctagatcttttaattgttggaggctactggggaaaaggtcttcgtggtggc
atgatgtcacacttcttatgtgcagttgcagagactcctttacctggtgaaaatccatct
gtattccagtcaatctgtcgtgttggctctggttacactatgaaagagctgtatgatctt
ggcttaaagctagccaaacattggaagccatatcgtaaaaaggatcctccttgtaatatc
ttgtgtgggactgagaagcctgaagtctacattgaacctcagaattcggtcattgttcaa
atcaaagcagctgagattgtcagtagtgatatgtacaaaactgattgtacattgcgtttc
ccacgtattgagaggataagagaagataaagaatggcatgaatgtatgactcttgacctt
ctagaacaactcagaggtaaagcttttgggaagttagcaactaagcaccttgatatagat
gatgatgagcctcaagaaaagaagcgtaaaactctgcagaaggttaagaaaaaaattggt
gtaatggatcattttaaagcccctgatctttctaatgtaaacaaaattctcagtatattt
gaagatgttgaattttgtgttatgtctgggacaggtgactattcaaaatatgagctggaa
agtaaaatagcacaatatggtggttccatcgtacaaaacccaggtctggacacctattgc
gttgttgcaggaactgagaatgtcagagtgaaaaatattatttcttccaacaaacatgat
gttgtgagagtggaatggcttttacaatgctttcaaacccaaatgtttgtgccttggcag
cctgctttcatgatccacatgtctccagaaacaaaacaacactttgcctgtgaatatgac
cgctatggtgacagttatatggttgatactgataaggcccagttgaaggaggtcttctca
agaatgagtaaatttgaggaaaagatctcttgggatgtgattgctgacatagaagcacgt
tattcctgggagaactttccgctcagcatgttcaggcagcacaccatttatttggcccct
ccggacaaagtgagcaattcaggtgctgagattaatcaaacagttctgcgaactgacatt
ttgatgcttcgttttcatggagcaaaagtgctcacacagcttgaggagggtgtgtcccat
gtaatcgttggaagagatcatgctcaagtgaaagaactaaagaccgttagaagaacattt
aataggaaattcaaaattctgtctgaacaatggataaaggattccataaagactggaaag
ttacagaatgaaaatgtttacttaatataa
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