Hemicordylus capensis (graceful crag lizard): 128348245
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Entry
128348245 CDS
T08891
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04622
RIG-I-like receptor signaling pathway
hcg04623
Cytosolic DNA-sensing pathway
hcg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128348245 (RIGI)
04623 Cytosolic DNA-sensing pathway
128348245 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128348245 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hcg04054
]
128348245 (RIGI)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128348245 (RIGI)
Pattern recognition receptors [BR:
hcg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
128348245 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SWI2_SNF2
AAA_25
AAA_19
MALT1_Ig
Motif
Other DBs
NCBI-GeneID:
128348245
NCBI-ProteinID:
XP_053159975
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All DBs
Position
2:complement(130366004..130431447)
Genome browser
AA seq
951 aa
AA seq
DB search
MALPGNSNQQPGQQQQGPALSNTIPIINMLTCFKQWQKDITKFVWQGKRPRIKFKNLTDA
KEREAVERIQTTGEKKGPTVAAELFIDTITELMAEGWFRGFLDALREAGYTGLYEAIENW
DFKMIDSLEPHRILLKRIEPSMKNIDPDQILPFLNECLIHQELEEILQLNHNKGKGASAT
KLLECLGRSDKAHWPKTFQTALDRADYYCESRLWDLKEEHNNTDAEMTDVDEDSRAVEVN
LHYSEEAESDNLSENACSPSEVCQRSIYVPKEARSYQTELAQPAFNGKHTIICAPTGSGK
TFVSVMICDHHLRNMPAGKKGKVVFLATKVPVYEQQKKVFQEHFKRSSYTVTGICGETAA
NAPVAMMIEGNDITVMTPQILVNCLNDGTLSSLSLFTLMIFDECHNTVGNHPYHVLMSRY
LDLKFEQAATPLPQIIGLTASLGVGSSKNLDETIEYICTLCASLNAEVISTVKENVKDLE
EVVYKPQKIITLVGKRPRNCFVEVILHMMAEIEKLARELYPIDALSPIRSRSFGTQKYEQ
WIVDVQKRCRILQEESSICRALFVYTEHLRKYNDALIINDDARTQDALNYLKEFFENIGS
GGFDDIEQQLAAKFEAKVPVLNAACQDESNENPKLEEITFILEEEYRFNPQTRTILFVKT
RALVAALKNWIEESPRLRHLKPEVLMGRGKRNQNTGMTLPNQKGVLDSFKTEANSKMLIA
TSVADEGIDIAQCNLVLLYEYTGNVIKMIQVRGRGRAKDSKCFLVTSKSEQADNERSNIL
KEGMMNKAIENLQKWDEKVFMQKIDDLQKKQKRMQNSKKKEPQPKPVISDLRLLCGKCKK
VACDTENIRVIEGSHHTVLGESFRTRYQTKPHNRPNRYGNFEKRNKMYCSAPNCHHDWGI
TVRFCTFEDLPIIKIESFSVENVATGKQLYFRKWKDVNFAIKEFDINEMTD
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggccctgcctggaaactcaaatcagcagcctggccaacagcagcagggccccgccttg
agcaatactattcctataattaatatgctaacctgtttcaagcaatggcagaaggacata
actaagtttgtttggcaagggaaaagaccaagaattaaatttaaaaatttaacagatgcg
aaagaaagagaggcagtggagagaattcaaactacaggagagaagaagggacctacagtt
gcagcagagctatttattgacaccatcactgagctcatggccgaaggatggttccgtgga
tttttggatgcactgcgcgaagcaggttacactggcctttatgaagcaattgaaaactgg
gacttcaagatgattgacagtctggagccgcatagaatattactgaagcgaattgagccc
tccatgaaaaatattgaccctgaccagatacttcccttcttaaatgagtgtcttatacat
caagaactggaagaaattctacagcttaaccataacaaaggcaaaggagcaagtgcaacg
aaacttttggaatgcctgggtaggtcagataaggcgcactggcctaaaaccttccagact
gcactggatcgggctgattattattgtgaaagcaggctgtgggatttgaaagaagaacat
aataacacggatgctgaaatgacagatgtggatgaggacagccgtgctgttgaagtaaat
ttacattattcagaagaagcagaatctgacaaccttagtgaaaatgcatgttccccttca
gaagtctgtcagcgatccatttatgttccaaaggaggctaggagctatcagactgaactt
gcccaaccagctttcaatggcaaacataccataatttgtgcccctactggatctgggaag
acctttgtgtcagttatgatatgtgaccatcacctccgcaacatgcctgctgggaagaaa
gggaaagttgtctttcttgctactaaagtcccagtatatgaacagcagaagaaagtcttc
caggagcacttcaaaagaagcagttacactgttacaggcatatgtggggaaacggctgcg
aatgcccctgtagctatgatgatcgaggggaacgatataactgtcatgactcctcagatt
ctcgtaaactgcctcaatgatggaacactcagctctctttcattgtttacactgatgatt
tttgatgagtgccacaacaccgttgggaatcacccttaccatgtattaatgtccaggtac
ttggaccttaaatttgagcaggctgcaacgccactacctcagattataggactgacggcc
tctctcggcgttggtagttccaagaatcttgatgagaccatagaatacatctgtacactt
tgtgcctctctcaatgctgaagtcatatcgacagtcaaagagaatgtaaaagacctggag
gaagttgtctacaagccccaaaaaattattacgcttgtggggaaacgtccccgtaattgt
tttgtggaggttattttgcacatgatggctgaaatagaaaagctggcaagagagctttat
cctatagatgctttgtcccccatccggagcaggagttttgggacacagaagtatgaacaa
tggattgttgatgtacagaagagatgccgaatattgcaggaagaaagcagcatttgcagg
gctctttttgtttacacagagcatctgaggaaatataatgatgccctcattattaatgat
gatgcccgtacccaagatgcactaaattatctgaaggaattctttgagaatatcggaagt
ggaggatttgatgacatagaacagcagctggcagcaaaatttgaagctaaagtgccagtg
ttgaatgcagcttgccaagatgaatcgaatgaaaatcccaaattggaagaaatcactttc
atcctggaggaagaataccgcttcaatccccagacccgcaccattctttttgttaagaca
agagcactagtggccgcactgaagaactggatagaagaaagcccccgactcagacacctg
aagccagaagtgttgatgggacgtgggaaaagaaatcagaacactggtatgaccctccca
aatcaaaaaggtgtattggattcctttaaaactgaagcgaacagcaagatgctcatagct
acatctgttgctgatgaagggattgatattgctcagtgcaaccttgtcctgctgtatgaa
tatacaggcaacgtcatcaaaatgatccaagtcagaggtcgcggaagggcaaaagacagc
aagtgctttcttgtgactagcaaaagtgagcaggcagacaatgaacgcagcaacatattg
aaggaggggatgatgaacaaagccattgagaacctgcagaagtgggatgagaaggtattc
atgcagaagatagatgatctgcaaaagaagcaaaagaggatgcaaaattccaagaaaaaa
gaaccccagccaaagccagtgataagtgatctgagactgctgtgtgggaaatgtaaaaaa
gtagcctgtgacacagagaacatcagggtgattgagggtagtcaccacactgtcttgggt
gagagctttaggacacgctatcaaacaaagcctcataatcgcccaaaccgctatggcaat
tttgaaaaaagaaacaagatgtactgcagtgctcccaactgccatcatgactggggaatc
acagtgagattctgcacatttgaggatctccccatcatcaaaattgaaagcttttcggtg
gagaatgttgccactggaaaacagttatattttcggaaatggaaagatgttaattttgca
atcaaggaatttgatattaatgagatgactgactga
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