Hahella chejuensis: HCH_04729
Help
Entry
HCH_04729 CDS
T00307
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hch
Hahella chejuensis
Pathway
hch03030
DNA replication
hch03410
Base excision repair
hch03420
Nucleotide excision repair
hch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCH_04729 (ligA)
03410 Base excision repair
HCH_04729 (ligA)
03420 Nucleotide excision repair
HCH_04729 (ligA)
03430 Mismatch repair
HCH_04729 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hch03032
]
HCH_04729 (ligA)
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_04729 (ligA)
Enzymes [BR:
hch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HCH_04729 (ligA)
DNA replication proteins [BR:
hch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HCH_04729 (ligA)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HCH_04729 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCH_04729 (ligA)
MMR (mismatch excision repair)
DNA ligase
HCH_04729 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCH_04729 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ABC31427
UniProt:
Q2SD47
LinkDB
All DBs
Position
complement(4859300..4861351)
Genome browser
AA seq
683 aa
AA seq
DB search
MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTITPD
SPTQRVGAAPAEGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEP
KLDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEI
YLPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGEL
PGTQHDILTQLQQWGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRID
LQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSN
ATLHNMDEIRRLDVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRPEHCPVCGSDV
LQLEGEAVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLVEKELIDSPASLY
SLKAPDVAGLERMGEKSAQNLINAIEASKQTTFARFIYALGIREVGEATAKVLAQHFPTL
DLLKQATEEDLVEAPDIGPISAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLP
LSGQTAVVTGVLADYSRDEAKDLLTRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGV
KVLDEDAFKQLLEEHQAHLGGEA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtccctgccgccattcaggaagagctgaatacgcttcgcgaaaccatcaac
gatcataattaccgttattacactctggatgatccctcgattcccgatgcggaatacgac
cgtttaatgcgtcggctgcgcgaaatcgaggcggagttcccgcaaacgatcacgccggac
tcgccgacccaacgggtgggcgcagcgcctgcggaaggcttcgagactgtatctcatcgc
ctgcccatgctgtctttggacaatgcgtttgaagagcaggatctgctggacttcgatcgc
cgtgtgcgggagcgcctcaaggaagcggaagacgcgcgcatcgactactgttgcgaaccg
aaactggacggcatcgctatcagtctgttgtatcgcgatggatatttggtgcgtggtgtg
actcgcggggatggctccgcgggtgaagacattaccgcgaatgttaagacggtaaagaat
attccgcttaaattacgtggagaagggtatcccgcagaattggaagtgcgcggtgaaatt
tatctgcccaaggccgccttcgacgccataaacaaagacgcggcggcgaaaggcgaaaaa
acgttcgtcaacccgcgcaacgccgcggcgggaagtctgcgccagcttgatccgcgcatc
accgccaagcgggcgttggaaatgtgttgctacagcgtaggctatttcgaaggggaattg
ccggggacgcaacacgatattctcacgcaactgcagcagtgggggctgaagatcaacagc
cagatgaagttggcgtcaggggcgcaggagtgcctggattactaccgccatatcatgagc
gttcgtgaccaattgccgtacgaaattgatggcgttgtgttcaaggttaatcgcatagat
ctgcagcaggagctgggattcgtatcgagggctccgcgttgggcgatcgcgcataagttc
cccgcccatgaggaaatgactgagctgctggcggtggatttccaggttggcagaaccggc
gccgtgacgccggtggcgcgcttaaagccggtattcgtgggcggcgttacggtcagcaac
gccaccctgcacaatatggatgagattcgtcgcctggatgtgcatattggcgatacggtg
atcattcgccgcgcgggggatgtcattccccaggttgtcagtgtggtgcaggaccgtcgc
ccggaaaacgccgttccggttgatcgtcccgagcactgtccggtttgcggctctgacgtg
ctgcaactggagggcgaagcggtggcgcgttgctccggcggactctattgctccgcgcag
cggaaagaggcgatcaagcattttgcatcccgcaaagctatggatatcgacggtctgggc
gaccgactggtcgagctgctggtggagaaagagttaatcgactctcccgccagtctgtat
tcgctgaaagcgcctgatgtggcgggactggagcgcatgggcgaaaagtctgcgcaaaac
ctgattaacgctattgaggcttccaaacagacgacattcgcccgctttatctacgctttg
ggcatccgggaggtaggagaagccacggccaaggtgctggcgcaacacttcccaaccctt
gatctgctgaagcaggccactgaagaggacttggtggaggcgccggatatcggtcctatc
agcgcaggccatattcgttccttctttcaacaggagcacaatcttgaaacgattgatgcg
ctgttgaatcagggcgtgagctggcctgaagtggtcgtacgcagcacggagacgctgccg
ctatccggccagaccgcggtggttaccggcgtccttgcggattacagccgcgacgaggcg
aaggatttattaacccgtctcggcgccaaggtgtccggcagcgtgtccgccaaaaccggt
tttgtggtggcgggagagaaagcgggctccaaacttaccaaggcgcaggacctcggtgtg
aaagtgctggatgaagacgcattcaagcaactattggaagagcatcaggcgcatttgggc
ggcgaagcctga
DBGET
integrated database retrieval system
