Hydrogenimonas cancrithermarum: HCR_12090
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Entry
HCR_12090 CDS
T09533
Symbol
nth_1
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hcj
Hydrogenimonas cancrithermarum
Pathway
hcj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCR_12090 (nth_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcj03400
]
HCR_12090 (nth_1)
Enzymes [BR:
hcj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HCR_12090 (nth_1)
DNA repair and recombination proteins [BR:
hcj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HCR_12090 (nth_1)
Prokaryotic type
HCR_12090 (nth_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
HHH_5
Ogg-HhH
EndIII_4Fe-2S
HHH_8
Motif
Other DBs
NCBI-ProteinID:
BDY12897
LinkDB
All DBs
Position
complement(1192394..1193035)
Genome browser
AA seq
213 aa
AA seq
DB search
MNKINFAKAVKLLEEAYEDWDAPAKRFERGYRRTPYTIMISVVLSFRTKDEVTLAADKKL
FALADTPEKMVKLSRQEIEKVIYPVGFYRKKAQTILDISHTVLERFKGEVPRSEAELLGI
KGIGPKAANIILESAFGVETVAVDIHVHRILNRWGFVSTKTPEESLKILKEKLTPAEQKG
LNKLLVSFGQVLCRPVKPICSECPVVQLCERKL
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaataagataaattttgctaaagcggtaaagcttctcgaggaagcctatgaagattgg
gatgcccccgccaaacggttcgagagaggatacagacgaacgccctatacgatcatgatc
tctgttgttctcagttttcggaccaaagacgaggtgacgctggctgcggacaagaagctc
ttcgcgctggccgacacgcctgaaaagatggtgaaattgagccggcaagagatcgaaaaa
gtgatctatcctgtcgggttctatcgtaaaaaggcccagacgattctggatatttcgcat
accgttttggaacgattcaaaggagaggtaccccgaagcgaggcggaactgctgggaatc
aagggaatcggcccgaaggctgccaacatcatcctcgaatcggctttcggagtggaaacc
gtggcggtggacatccatgttcaccgcattctgaaccggtgggggttcgtcagcacgaaa
acaccggaagagagtctcaaaatactcaaagaaaaactcactccggctgaacagaagggg
ttgaataagctgcttgtgagtttcgggcaggtactatgcagaccagtaaaaccgatctgc
agcgaatgtccggttgtgcagctatgtgaaaggaagttatag
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