Halomonas chromatireducens: LOKO_02447
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Entry
LOKO_02447 CDS
T04292
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03030
DNA replication
hco03410
Base excision repair
hco03420
Nucleotide excision repair
hco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOKO_02447 (ligA)
03410 Base excision repair
LOKO_02447 (ligA)
03420 Nucleotide excision repair
LOKO_02447 (ligA)
03430 Mismatch repair
LOKO_02447 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hco03032
]
LOKO_02447 (ligA)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_02447 (ligA)
Enzymes [BR:
hco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOKO_02447 (ligA)
DNA replication proteins [BR:
hco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOKO_02447 (ligA)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOKO_02447 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOKO_02447 (ligA)
MMR (mismatch excision repair)
DNA ligase
LOKO_02447 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOKO_02447 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AMD01507
UniProt:
A0A109UM61
LinkDB
All DBs
Position
complement(2597676..2599724)
Genome browser
AA seq
682 aa
AA seq
DB search
MNQPEKKILDEVATLRAELDDANYRYYVLDEPRMTDADYDRRLRRLQEIEAEYPDLVTPD
SPTQRVGAPPDAGFPEVQHAVPMLSLDNALNEDEITAFVKRVADRLEIDGETIAFCCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLRGKAPPDLLEVRGEVI
MSHEGFEALNARAREGDAKVFANPRNAAAGSLRQLDPRITASRPLEFSAYQAARFEPDPG
DATHSQLMARLADLGLRTSAALEVVTGSQGLIDYCRRLGERRDRLGYDIDGVVIKVDDLR
LQRELGFVARAPRWAIAFKFPAQEETTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ASLHNADEIARLGVMIGDTVTIRRAGDVIPQVVRVDASKRPSDAREIVFPERCPVCESEV
ERLEGEVVARCSGGLYCAAQRKEALKYFASRRAMDIDGLGEKLIDQLVELDWVKTPADLF
RLKAEDLATLPRMAQKSSDNLVAALEKAKQTTLPRFIFALGIREVGEATAANLARHFGTL
DALMEAEVADLEAVEDVGPVVASHVYTFFRQPHNRETIEELRSLGLTWKEEVVGDRPQPL
AGQTWVLTGTLESMTRDEGKERLQALGAKVAGSVSKKTAAVVAGPGAGSKLAKAEQMGVS
VLDEQGFLERLEAWESGKEAAQ
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcccgaaaagaaaatcctcgatgaagtcgccacgctgcgcgccgaactcgac
gacgccaactatcgctactacgtgctcgatgagccgcgcatgaccgacgccgactacgac
cgtcggctgcgtcggctccaggaaatcgaggctgagtatcccgaccttgtgactcccgac
tcgccgacccagcgggtcggggcaccgcccgatgccggcttccccgaggtccagcacgcg
gtccccatgctctccctcgacaatgccttgaacgaggatgagatcaccgccttcgtcaag
cgcgtggccgaccggctggaaatcgatggcgaaaccatcgccttctgctgcgagcccaag
ctcgacggcgctgcggtgtccctggtctacgagcagggcgtgctggtgagcggtgcgact
cgcggcgacgggcgtaccggcgagggcattacctccaacctgcgtaccctgcgttcggta
ccgctgaaactgcgtggcaaggcgccgcccgacctgctggaggtgcgtggcgaggtgatc
atgagccacgagggtttcgaggccctcaacgccagggcccgggaaggggacgccaaggtg
ttcgccaacccgcgtaacgccgccgccggcagcctgcgccagctcgaccccaggataacg
gcctcgcgtcccctggagttcagcgcctaccaggcggcccgcttcgagcccgacccgggt
gatgccacccacagccagctgatggcccggctggctgatctggggctgcgcaccagcgcg
gccctcgaagtggtcaccggcagccaggggctcatcgactattgccggcgactgggcgag
cgccgcgaccggctcggctacgatatcgacggggtggtgatcaaggtcgacgacctgcgc
ctgcagcgggaactcgggttcgttgcccgggcgccgcgttgggccatcgccttcaagttt
cccgcccaggaggagaccacgaccctcaacgacgtggagttccaggtcggccgcaccggt
gcgatcacccctgtggcccggctcgagccggtcaccgtggcaggggttaccgtttccaac
gccagcctgcacaacgccgatgagattgcccggctcggtgtgatgatcggcgacaccgtc
acgattcgccgcgccggcgacgtcattccccaggtggtgcgggtagatgcgtcgaagcgc
ccgagcgatgcgcgcgagatcgtcttccccgagcgctgcccggtgtgcgaatccgaggtc
gagcgtctcgagggcgaggtggtggcccgttgttccggcgggctctactgcgccgcccag
cgcaaggaggcgctcaagtacttcgcctcgcgtcgggcaatggatatcgacggcctgggc
gagaagctgatcgatcaattggtcgagctcgattgggtcaagacaccggctgaccttttc
cggctcaaggccgaggatctggcaacgcttcctcgcatggcgcagaaatcctccgacaac
ctggtggcggcgttggaaaaggccaagcagaccactctgccgcgtttcatcttcgccctg
ggcattcgcgaggtaggcgaggccaccgccgccaacctggcgcgccacttcggcaccctg
gatgccctgatggaggccgaggttgccgacctggaggccgtcgaggacgtgggtcccgtg
gttgcctcccacgtgtacacattcttccggcagccccacaatcgcgagaccatcgaggag
ctgcgctccctgggcctgacctggaaagaggaggtggtcggcgatcgtccccagcccctg
gccggccagacctgggtgctgaccggcacactggaaagcatgacccgcgacgagggcaag
gagcgccttcaggcgctcggcgccaaggtggctggcagcgtctcgaagaagacagccgcc
gtggtggcggggcccggcgccggcagcaagctcgccaaggcggaacagatgggggtgtcg
gtgctcgacgagcagggcttcctggaacgcctcgaagcctgggagagcggcaaggaggca
gcgcaatga
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