Hippocampus comes (tiger tail seahorse): 109523943
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Entry
109523943 CDS
T04969
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03440
Homologous recombination
hcq03460
Fanconi anemia pathway
hcq04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109523943 (brca1)
09124 Replication and repair
03440 Homologous recombination
109523943 (brca1)
03460 Fanconi anemia pathway
109523943 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hcq01009
]
109523943 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hcq04121
]
109523943 (brca1)
03036 Chromosome and associated proteins [BR:
hcq03036
]
109523943 (brca1)
03400 DNA repair and recombination proteins [BR:
hcq03400
]
109523943 (brca1)
Enzymes [BR:
hcq01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109523943 (brca1)
Protein phosphatases and associated proteins [BR:
hcq01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109523943 (brca1)
Ubiquitin system [BR:
hcq04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109523943 (brca1)
Multi subunit type E3
BRCC complex
109523943 (brca1)
Chromosome and associated proteins [BR:
hcq03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109523943 (brca1)
DNA repair and recombination proteins [BR:
hcq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109523943 (brca1)
BRCA1-A complex
109523943 (brca1)
BRCA1-B complex
109523943 (brca1)
BRCA1-C complex
109523943 (brca1)
BRCA complex
109523943 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
109523943 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_2
RTT107_BRCT_5
zf-RING_5
zf-Nse
zf-ANAPC11
zf-RING_10
zf-RING_6
zf-RING_4
zf-MIZ
zf-rbx1
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
109523943
NCBI-ProteinID:
XP_019738996
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MLLTCCRNLVTVRFVALRLKNKQKNDFMAPPKHTEVKRGIAVLWETLQCPICLDLLTKPV
STKCDHQFCKFCMLKLLDNAKQSKADCPVCKEKITKRSLQESPGFQRLVTGLQDMIQAYE
HDTGTNYLTGLAQERRRAGLNDDKRVDGTPDNVEDVEKAPPSSHTSTIAALNGFARVMGF
GDSDPVATEGEVEDGSVQTSQSIKSMEATANASRLATRGKRRKDQVVPVVSEIQPLTRLS
RQKQKKDEVPEQIFENRKKKSKQKVAEWLMRAPAEGSLELAQPADVAQAFDDSDSSASTL
DLRTLGKKEQVAKTLEEHVFGVTYTRKQRGNQRASNTSRSHSSEKLSEKRKKMTGTEDKL
VHLEAPAIMDISEEPGNCETQKTELDKSPENDELTILGALHPERKPTKRSHSALQEVDSD
LQAKAETESSAPKKADRRRGPSERGKSARAVQPLVLVGVQDGGDDAKSKLPSEAAQVHIE
NYPSSEDQEAAVTTGTGRSRRLHLSSQNVRQAAPQKAATRQGARALRKDVKDDGTSDLAA
AKACKSNGCVYDKDICAIENMDISHLETLVQGVRPSESEAGADREPPLIPSCAGVLGAAP
RSMQSAPAEKEDCHDSEMDTAQILRSFKDTKRKSFRLARQSGKKSRSQDEELAHSSGKRC
LTRLAVQRSKQQQQQTTQSSDLTDPSTCSDLLPPTNLPAKKMDANVVAAPVLLRSSISSG
LSPNKVTTRETESPLASMLPQVVDSGLRFHERQEIPESPFDPAATGNSSASTSQHVVHAD
CSLTPDGLGVQPSQPPHGTQTSLRSSARSSPSRRRRRRTRRLRYSSGVDEYREQQSLSSS
QDTPSTLPPIFHGAAARPHGHRADDAAEAHQHKADDVAVRCESPDCITASQASVDLFDSP
EECDAPVNDASVSAESSQFASEVLVTQQKLEMQKELLRLEKLMALVTEVLQEKEANSAVC
SDAPKSDPRDPNASCDPDRLVTRAALEHQQHASNVAEYPRVAPLFCREDLGRNAEELGKR
LRDGEHLSQPAIETSPHAGPAGKSCGRSKDKENTTPERDGGRAKMMLVSSGLAPAEQMAV
RRFARRVGARVVSQVTAEVTHIVMCTDEQLVCERTLKYFLGIAGRKWVVSFQWIAECFKQ
KKLVDESLFEVRGDVVNGSDHLGPKRARTTADDNLLMKGYEICFQGPFANMTTEEMEWMV
QQCGATVVKDPLVLDSTRKSNQLVIVQPGTDPRSYSGLAKQATLVSRGWLLDTVATYTLQ
GYANYLI
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgctactgacgtgttgtagaaacttagtaactgttcgttttgttgcgcttagattaaaa
aacaaacaaaaaaacgacttcatggcaccacccaaacacaccgaggtgaaaagaggaatc
gcagtcctgtgggagactctgcagtgccccatatgtttggatttgttgacgaaaccagtt
tctaccaagtgtgaccatcagttttgcaagttttgtatgctgaagctgttggacaacgcc
aagcagagcaaagccgactgcccagtgtgtaaagaaaagataacgaagagaagcttgcag
gagagtccgggttttcagagactcgtcacaggactgcaagacatgatccaggcatatgaa
catgacaccggcacaaattacttgactggactggcccaggaaagaaggcgagctgggctc
aacgatgacaaacgggtggatgggacgcccgacaatgtggaggatgttgaaaaggctcct
ccgagttctcacacatcaactatagcagctctcaatggatttgcaagagtgatggggttt
ggagattccgatcctgtggcaacagaaggcgaagttgaagatggctctgttcaaacgtca
caatccattaaatcgatggaggcaacagccaatgcatcaagactcgcaactcgtgggaaa
aggcgaaaggaccaagttgtgccggttgtttcggaaattcaacctctaacgcgactctcc
aggcaaaagcagaaaaaggatgaggtgcctgagcagatctttgagaacaggaagaagaaa
agtaagcagaaggtggcggagtggctcatgagggctcccgccgaggggagcctcgagttg
gcgcagcccgcagacgttgcccaggctttcgacgattccgacagctccgcttccacgctg
gacctccggacgctcggcaagaaggagcaggtcgccaaaacgctcgaggagcacgttttt
ggggtcacctacacacgaaagcaaagagggaaccaaagagccagcaacacatcgcgatca
cactcctcagagaagctgtccgagaaaagaaagaagatgaccggcaccgaagacaaactt
gtccatctggaagcgcctgcaatcatggacatctctgaagaaccaggaaattgtgagact
cagaagacggagctggacaaatctccagaaaatgacgagctgacaatcctcggagccctt
catccggaacgcaagccaacaaagaggtcacatagcgccttgcaggaggtcgactctgat
ttacaggccaaagcggagacggaaagttcggctccgaaaaaagcagaccggcggcgaggc
ccctcagagagaggcaagtcagccagagctgtgcaacctctggttcttgtcggagttcaa
gatggaggcgacgacgctaagagtaagcttccgtcggaggcggctcaggttcatatcgag
aactacccgagcagcgaggaccaggaggccgcagtcacgacgggcaccgggagatccagg
agacttcacttgtcttcccagaacgttcggcaggcggctccccaaaaagccgcgactcgc
cagggggcgagagcactcaggaaggacgtcaaagacgacgggacgtcggatcttgcggcc
gcaaaggcctgcaaaagtaacggatgcgtatatgacaaagacatctgtgcaatcgaaaac
atggacatctcccatctggaaactctcgttcagggcgttcgtccctctgaaagtgaagca
ggcgcagatcgtgagccccctctgattccaagttgtgcaggtgttttgggggcggctccg
cgttcgatgcagagtgccccggcggaaaaggaggactgtcacgacagtgagatggacacc
gctcaaatcctcaggagcttcaaagacaccaaaaggaagtcattccgcctcgcccgccaa
agtgggaagaagagtcggagccaggatgaggagctcgcgcacagctcgggaaagaggtgt
cttactcgtttggcagtccagcgttccaagcagcagcagcagcagacgacgcagagttcg
gacctcactgacccgtcaacctgcagcgatttgctccccccaacaaatttgcccgcaaag
aaaatggatgccaacgtggtggccgcccccgttctactcagaagttctatcagcagtggc
ctcagtccaaacaaagtgacaacgcgcgaaacggaaagtcctctggcatccatgctgcct
caggtggtggattctggactccgttttcacgagcgccaggagattccagagagtccgttt
gaccccgccgccactggaaactcttcagcaagcacatcccaacatgtcgtccacgccgac
tgttccttgactccggacgggctcggagttcagccaagccagccgccccacggaacccaa
acgagcctgcgctcgtccgcccggagcagcccgagccgcaggagacggaggaggacccgg
aggctgcggtactcgtcaggcgttgacgagtaccgcgagcagcagtcgttgagcagctcc
caagacacgccatccactttgccgccaatcttccacggggccgctgcccggccgcacggc
caccgcgccgacgacgccgctgaagctcaccaacacaaagccgacgatgtcgccgtgcgg
tgcgagagtccagactgcatcaccgccagccaggcgtccgttgacttgtttgactctccg
gaagaatgtgacgcaccggtgaacgatgcaagcgtgtctgccgagtcgtcgcaattcgca
agcgaggttctcgttacgcagcaaaagctggagatgcagaaggagctgctgaggctggag
aaattgatggcgctggtgaccgaggtgctccaggagaaggaggccaactccgctgtgtgc
tccgatgcgccgaaatcggatccacgtgacccaaatgcaagctgtgatccagacaggttg
gtcacgcgggccgctttggaacatcaacagcacgcgtccaacgttgccgagtatcctcgc
gtcgcaccgttgttttgcagggaagaccttgggagaaacgcagaggagctcggaaagcgt
ctccgcgatggagaacacttgtctcagcccgccatcgagacgtcgccgcacgcaggaccc
gctgggaaaagctgcggccgttcaaaggacaaagagaacacgactcccgagagagacggc
ggcagagctaaaatgatgctggtctcgtctgggttggcgcccgccgagcagatggcggtg
aggaggtttgctaggagagtcggcgctcgtgtggtttcccaggtgaccgcagaggttact
cacattgtcatgtgcacagatgaacaactggtatgtgagcgtaccctcaagtacttcctt
ggcattgcgggcaggaagtgggtggtgagcttccagtggattgccgaatgcttcaagcaa
aagaaactggtggacgagagcttatttgaagtccgaggagacgtggtgaacggatccgat
cacctcggtccgaagagagctcgcaccaccgctgacgacaatcttctcatgaagggctac
gaaatctgcttccagggaccttttgcaaacatgaccacagaggaaatggagtggatggtg
cagcagtgcggagccacggtggtcaaagacccgctcgtgctcgacagcacacggaaatcc
aatcagctggttatcgttcagcctggaacggatccacgctcgtacagcggtctggcaaag
caggccacgcttgtgagtcgcggttggttgttggacacggtggccacctacaccctccaa
ggttacgccaactacctcatatga
DBGET
integrated database retrieval system
