Haliotis cracherodii (black abalone): 139471511
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Entry
139471511 CDS
T10814
Name
(RefSeq) agrin-like isoform X1
KO
K06254
agrin
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra04512
ECM-receptor interaction
hcra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139471511
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139471511
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcra00535
]
139471511
Proteoglycans [BR:
hcra00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
139471511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
Kazal_1
NtA
Laminin_G_3
EGF_laminin
EGF
Kazal_CFAI
hEGF
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
139471511
NCBI-ProteinID:
XP_071109969
LinkDB
All DBs
Position
Unknown
AA seq
1621 aa
AA seq
DB search
MEFTQSGKGGLCLTGLILILSLQFTCGRPKSPCVEQPLEYREEVANVVISGTVKDIMPDA
NGKNMYKSEIEVKRVFKGDNIVNAHVNFEDPVTHHKMLMIEGFGDEGICDSNVRKFDTRI
FLLNKGSNGDLKLNSSIVRISLRNLEHTDAVVKDIPYKKPELPKKSPCETNFCAFGAHCM
VNSTSGTHYCKCDTSCDDLFAPVCGTDDVSYINECYLKRESCLSKRRIKVKLQGNCDPCE
GFRCEEPEVCHLDKQRKPICRCNFQCADVFEPVCATNGRTYSNKCLLRREACKARKDIDV
LYSGECTPGINVISPGAVQDEYKTDVTNPCDKIRCGDEEECSVDRQGRASCVCPPPCQPV
VRQVCGNDSTTYDSECELRRQSCAQKVYVVVVHTGPCGHDIPCRSFRCDYGAMCVVRHGQ
PSCQCPSCNEDFDPVCGEDGITYNNECKLRQEKCQHRINIRIKHKGPCNGCENVKCDFHA
VCNSDGRRAECVCIEKCTDVRDPVCGDDGITYKNECLMKVTSCRYRKFISKASGGECGRC
SGKVCRFGANCENGACVCPILCETTHKPICATNGQTYVNRCDMKRAACAQNMELDVDHEG
ECPDHSGSGDEYCHCNKMGSYKTTCDPVSRQCSCKPGVGGLRCDRCLPGYWGMQLIEEKG
NVGCIPCNCNMRGAVREDCVQMSGRCMCRPNISGMKCNLCLDKKLLGPLGCIAQTPPRSC
AELDCQFGSICKEKNGELFCDCSHFCSGYDDEIGKSVCGSDGNNFPSECQLRQFGCQMQQ
EIHIQYYGHCRAAPSIRTTTPMPSTTRSRKTTRHITGPIPPDVEDVDTAGTDQPSIPEVE
TACGLMGKIDDLCLEDSNCCVNNSRCRLGLCTCFQGYVPSIDNRQCIEVFRTDSIKTEDI
DNACMHSPCENGGECELDDSLGYRCVCPLGKTGPLCKEDNAFSVPSFSGKSYLRVPRIRK
ANKNLNIEVVFQTLNKDGILLFNSQNKNGSGDFISLAIKDGFVEFRYNLGGGESTIRSKT
LVTLKKSHRVVIKRRGENGILIMDNEDPVSGASDHTHTSLNLGDPLFVGYVPNALPDVYK
RIGVSLGLVGCIHVLKAGNEGNLRDYNLEYPNRNTDIADGADIGECGNNPCKSMPCLNEG
ACMMQDQRNYQCLCREGFTGLLCEILVDPCASQPCQYGGTCITMGNDVGYECLCTEGRSG
TRCEKESLKRVFVPQFAGDAYMELPLEDNVGKQLTIEVWFKAFKPNGMILFATQFNGGKG
DFISLNMVKRKLQFRFSLGDRPAKLETSNHIHLNKWHRVVITRLNENGQMTLDKRPTVRG
KAPEPPRAQGTMKELNLGRPLYIGGYKGESSLPAGAEISANFSGAIQRITINGKTIDSLM
ESAEEMRNIEEYAGAPCNMNPCMNGGVCIPKLNDADCRCPLEFMGERCEKRAEHVDKDQP
VKFDGNTYLQYQNEKTQKSQAQRNNNIKIKFRTKERNGLIAFQNKGTSVMGDYLAVAVVN
EHVEFSFNLGKQSEKNLFKIRSTVAVSDGKWHMLTAIRELSEGRLQVDDETMMSSMSGVG
ASQLDTDGNLWIGGKPDLPWGLPPEYYSGFTGCIDEVIINRVGLHLVEDRESHSSTIAFC
S
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactcaatcgggcaaagggggactttgtctaacgggactcatactgatactg
agccttcagtttacctgtggtcgaccaaaatcaccatgcgttgaacaacccctcgaatac
cgcgaagaagtagctaatgttgttatatcggggactgttaaagacattatgcccgatgct
aatgggaaaaacatgtataagagcgagattgaagttaaaagggtttttaaaggcgacaac
attgtgaatgcacatgtcaattttgaggacccagtaacccatcataaaatgctcatgata
gaaggtttcggggatgaaggcatctgtgacagtaatgtccgaaaatttgacacgaggata
tttttactaaataaaggttccaatggggatttgaaactcaattcaagtatcgtccgaata
tcgctgcggaacttggaacacacagacgctgttgtaaaagatataccctacaagaagcca
gagcttccaaagaaatctccctgtgaaacaaatttctgtgcttttggggcccactgcatg
gtaaacagcacaagtgggacgcactactgcaagtgtgacacctcctgcgacgacctcttc
gcgccagtgtgcggcacagatgacgtctcgtacatcaacgaatgctacctgaaaagagaa
agttgtctctcaaagcgtcgcattaaagtgaagcttcagggaaattgtgacccatgcgaa
ggctttcgttgtgaggagcccgaggtgtgccatctcgacaaacagcgcaagcccatctgt
cgctgcaattttcaatgcgctgacgtctttgagccagtttgtgccacaaacggacgaaca
tacagcaataaatgcttactgcgcagagaagcatgcaaagctcgtaaagacattgatgtg
ttatattcaggcgaatgcactccaggaataaacgttatcagtcctggggctgtacaggat
gagtataagacagacgtaactaacccatgtgacaagattcgctgcggagatgaggaagaa
tgcagtgttgatcggcaaggacgtgcctcctgtgtgtgtcccccaccatgccaaccagtt
gtccggcaagtctgcggcaatgacagcacgacatatgacagcgagtgcgaactacggcga
caatcgtgtgcacaaaaagtgtatgtcgtggtagttcacacaggcccctgtggtcatgac
atcccctgccgatcattccggtgtgactatggtgcgatgtgtgtggtcagacatggccag
ccctcctgtcagtgtccatcatgcaatgaggattttgacccggtgtgtggcgaggatgga
atcacctacaataacgagtgtaaactcaggcaggagaagtgtcaacaccggatcaacatc
cgcatcaagcacaagggaccatgcaatggttgtgaaaatgtgaaatgtgacttccatgca
gtgtgtaacagcgatgggcgccgcgctgagtgtgtctgcatcgagaaatgtactgatgta
agagatccagtgtgcggagacgatggcatcacctacaagaatgagtgtctcatgaaggtc
acatcatgccgatatcgcaagttcatctccaaggcttccggtggagagtgtggcagatgt
tctggcaaagtttgcagatttggagccaactgtgagaatggtgcctgtgtttgcccgatc
ctttgtgaaactacccacaaaccaatttgtgccacaaacggtcagacgtacgtgaaccgc
tgcgacatgaagcgtgcagcatgcgcgcagaacatggagttggacgtggaccatgaaggg
gagtgcccggaccattctggatctggtgatgaatactgccattgtaacaagatgggctcg
tacaagaccacctgcgaccctgtctcgcgtcagtgcagctgcaagccaggggtcgggggt
ttgcgctgtgaccggtgcctgcctggctactgggggatgcaactcatagaagaaaaagga
aatgttggctgtataccctgcaactgcaacatgcgtggtgctgttcgcgaggactgtgtc
cagatgagcggccggtgcatgtgtcgacccaacatcagcggtatgaagtgcaacctctgt
ctggacaagaagctgcttgggcccctcggctgcatagcacaaacgcccccaagatcatgt
gcggaactggactgccaatttggctccatatgcaaggagaagaacggtgaactcttctgt
gactgcagccatttctgttccggttatgacgacgagattgggaagagtgtctgtggcagt
gatggcaataacttcccctcagagtgtcagctgcgtcagttcggatgtcagatgcagcag
gaaattcacatccagtattacggccattgtcgagcagccccatctataaggacaacaacg
ccaatgccgtcaacaacacgatctcgtaaaacaactcgtcacatcacgggaccgatacca
ccagatgtggaggatgtggacactgcagggacagaccagccctccatcccggaagtggag
acagcttgtggcctgatgggcaagatcgatgacctgtgtcttgaagactcgaactgctgt
gtgaacaacagccgctgtcgacttggactctgcacctgtttccaaggttacgtcccttcc
atcgacaacagacagtgcatagaagtatttcgaaccgactctatcaaaacggaagatatc
gacaatgcgtgcatgcactctccgtgtgagaacggtggagagtgtgaacttgacgactct
ctcggctaccgctgtgtctgtcctctgggcaagacaggaccactgtgtaaagaggacaat
gcatttagtgtgccatcattcagcggcaagtcctatctgagggtgccacggattcgcaag
gccaacaagaatcttaacatcgaggtggtgttccagactctcaacaaagacggcatcctt
ctctttaactctcagaataagaatggttccggagacttcatctctctggccatcaaggat
ggatttgtggaattcagatacaatctagggggcggtgaatcaaccattcgcagtaagaca
cttgtgacgctgaagaagtctcatcgtgtggtgatcaaacggagaggagagaatggcatc
ctcatcatggacaatgaagaccctgtctcaggcgccagcgaccacacccacacgtcactc
aacctgggagatccactcttcgttggctatgtgccaaatgctttaccagatgtgtacaag
cgtatcggcgtgagcctggggctggtcggctgtattcatgtgctaaaggccggaaacgag
ggcaaccttagagactacaacttggaatacccaaacaggaatactgacattgccgatggt
gccgatattggtgaatgtggcaacaacccctgcaagtccatgccatgtctgaatgaagga
gcctgtatgatgcaagaccagagaaactaccagtgcctgtgtagagagggattcacaggg
cttctgtgtgaaatcctggtcgacccctgcgcgagccagccatgccagtatggaggaaca
tgtataacgatgggtaacgatgttggctacgaatgtctgtgcactgagggaaggtcagga
accaggtgtgaaaaagaatcgctgaaacgtgtgtttgtacctcagtttgctggagacgca
tacatggagctccccctagaggacaatgtgggcaaacagctcacgatagaagtctggttt
aaggccttcaagcctaatggcatgatcctgttcgccacccagttcaatgggggcaagggt
gacttcatctccctcaatatggtgaagaggaagctacagtttcgattctccctcggagac
cgaccagcgaaactggaaaccagcaatcacatccatctcaacaaatggcatcgagtggtg
attacccgcctgaatgagaatggccagatgacgctggacaaacgtccgactgtcaggggc
aaagcaccagaacctccccgagcccagggcacaatgaaggagctcaacctcggccgacct
ctctacattgggggttacaagggggagtcttccctccctgccggcgctgagatctccgcc
aacttctccggggcaatacagaggataactatcaacggcaagaccatcgacagcctgatg
gagtctgcggaggagatgaggaacatcgaggagtatgcaggtgccccatgcaacatgaac
ccctgcatgaacggtggagtgtgtatccccaagctgaacgatgctgactgcaggtgcccc
ctggagttcatgggggagaggtgtgagaagagagctgaacatgttgacaaggaccagcct
gtcaaatttgatggcaatacatacctgcagtatcaaaatgagaaaacacaaaaatctcaa
gcacagagaaacaacaacatcaaaataaagttcaggacaaaggagcggaacggtttgatt
gccttccagaacaaggggaccagtgtcatgggagactatctcgctgtggccgttgtcaat
gaacatgtcgagttcagttttaaccttggaaaacagagcgagaaaaatctgtttaagatc
cgatctacagtggctgtcagtgatggaaagtggcatatgcttacggccataagagagctg
tctgaaggtcgtttgcaggtggatgacgagacaatgatgtcgtccatgtctggtgttgga
gcttcacaacttgacactgatggaaatctgtggataggaggtaagcccgacctgccgtgg
ggactgccacccgagtactattctggattcactggctgcatcgatgaggttataataaat
cgggttggccttcaccttgtggaagaccgcgagagccacagcagtacaattgctttttgc
tcataa
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