Haliotis cracherodii (black abalone): 139478872
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Entry
139478872 CDS
T10814
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
139478872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcra03400
]
139478872
Enzymes [BR:
hcra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139478872
DNA repair and recombination proteins [BR:
hcra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
139478872
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Viral_alk_exo
Motif
Other DBs
NCBI-GeneID:
139478872
NCBI-ProteinID:
XP_071117642
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MADANGDGDVKTGVSVAAKVSFTELCGLLEKISRTQGNDKKKRVLRDFVEKWRDFHNETH
GENKDTTDSFYPAMRLLLPHLEKERIAYGIKEHMLAKLMIEVLCLGKDSTDATRLLNYKA
PKTARADAGDFASVAYFVLKNRCPERGTLTIQEVNVCLDAIATNNAAKKKELVRKNILHL
LKNLSALEQKWLIRMIVKELKVGLSQASVFSIYHPDAEEFYNVNNNLEKVCRLLRDTDVR
VHEIGVTVFSPFSPMLGERASPDKVEKLFENKPYFIETKFDGERMLLHKNEDEYKYFSRS
GNEYTNVFGATPFDGSLTPYIANCFKTDVTTCILDAEMMGYHSASKTFGTKAEKFDIKSK
DLEETKGYQPCLHVFDILLYNKKVLTNLPLRERLQYIDKVVIEVEGRIVISRHKEGLTNQ
DCADALNEAIDNQEEGIMVKNMESVYRPSTRKGGWFKIKPEYIGGLMDELDVLIIGGYFG
VGHRGGMMSHFLCGVAVPSEDGGEPEIFHSFCKVGSGYSKKQLSEFNKKMVDHWQVFDKK
NPPSCIVLASGFKEKPDAWISPDKSCIVQIKAAEIITSDRFKTGSTLRFPRVEMIRDDKP
WFESMTVADIEDLKQKSGGKLTGARFELGEGPVKKKRKVVTRYEKPKLAAQFRGVDVSAI
TQVSHLLEGKEFCVINGPSDFTKHDMEKKVVEFGGTIVQNPGSSTFCVLAYKVIVRVNNL
IKRDVYDIVKVDWFRRLANAQRWLDWTPADMIHTSPRTHKQFQLDYDEFGDSYTTDTTVE
QLNTVFDKMEQNNDSHIEATQIAELEEKYFPDESPHGLFRICRMYLDNCLVFGDSSTLIP
NCSLDLLALELRFFGATLDAKLDPEVSHVIVDKKDLSRLPQLREVRKRRTRKFHIVTEDW
VRACMEEGGLVNERSFEPQVPS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcaaatggagatggagatgttaaaactggagtttctgttgcagccaaagtg
tcatttacagagctttgtgggcttctagagaaaatctcgagaacacagggaaatgataaa
aagaaaagagtactaagggactttgttgagaaatggcgtgactttcacaacgaaacacat
ggtgaaaataaagacacaacagactccttctatcctgcaatgagacttcttctgcctcat
cttgaaaaagaacgtattgcgtatggaataaaagagcacatgcttgctaagctgatgatt
gaggttctctgtctgggcaaggacagcacggatgccaccaggctgctcaactacaaagct
ccaaaaacagcacgagcggatgctggagatttcgccagtgtcgcatacttcgtgttgaag
aaccgctgtcctgaaagagggacactcaccatacaggaagtgaatgtgtgccttgatgcc
atcgccaccaacaacgcagcaaagaagaaggagcttgtgcggaagaacatccttcacctg
ctgaagaacctgtctgccctggaacagaagtggttaatcaggatgatcgtgaaggagctg
aaggtaggcctgagtcaggcatcagtcttctccatctaccatcccgacgctgaggagttc
tacaacgtcaacaacaacctggagaaggtgtgtcgacttctacgcgacactgacgtccgt
gttcatgagattggtgtcactgtcttctccccattttcccccatgctgggtgagagagct
tctcctgataaggtggagaaattgtttgagaacaaaccatatttcattgagacgaagttt
gatggagaacggatgttgctgcacaagaatgaagatgaatacaagtacttctcccgcagt
ggcaacgagtacactaatgtgtttggcgcaactccgttcgatggcagtctgacaccatac
atagccaactgcttcaagacagatgtcaccacctgcatcctggacgctgagatgatgggg
taccattctgcctccaagacttttggtactaaagctgagaagtttgacatcaagtcaaag
gacttggaggagacgaagggctaccagccatgtctacacgtgtttgacatcctgctgtac
aacaagaaggtgttgaccaacctgcctcttagagagaggctgcagtacatagacaaggtc
gtcatcgaggtggaggggcgcatcgtcatcagtcgccacaaggaggggcttaccaaccag
gactgtgctgacgccctgaacgaggcgatcgacaaccaggaggagggcatcatggtgaag
aacatggagtctgtgtaccggcccagcaccaggaagggaggctggttcaagatcaagccc
gagtacatcggggggctgatggacgagctggacgtcctcatcatcggaggctactttggt
gtggggcatcgtgggggaatgatgtcacacttcctctgtggggtggcggtgccttccgag
gatggaggtgaacctgagatattccactccttctgcaaggtgggttcgggctactccaag
aagcaattgagtgaattcaacaagaagatggtcgaccactggcaggtgtttgacaagaag
aatccgccatcttgcattgtccttgcgtcagggttcaaggagaagccggatgcctggatc
agcccagacaagtcctgtatcgtgcagatcaaggccgctgagatcatcaccagcgaccgc
ttcaagacaggcagcacgctccggtttccccgtgttgaaatgatccgagatgataagccc
tggtttgagagtatgacagtagctgacattgaggaccttaaacagaaatctggcgggaag
ttgacgggtgcgaggttcgagctgggggaggggccggtgaagaagaagaggaaggttgtg
acgaggtacgagaagcccaagctggctgcccagttccgtggagtggatgtgtctgccatt
acacaggtgtcccacctgctggaggggaaagagttctgtgtcatcaacggcccctcggac
ttcaccaaacatgacatggagaaaaaggttgtcgagttcggagggacaattgtacagaac
ccaggtagcagcacgttctgtgtactagcttacaaggtaattgtccgagtgaacaacctt
atcaagagagacgtctacgacattgtgaaagttgactggttccgtcgactggccaatgca
cagaggtggctagactggaccccggcagacatgatacacacgtccccgcggacacacaag
cagttccagctggactatgatgagttcggtgacagctacacgaccgacaccaccgtggag
caactcaacacagtgtttgacaagatggaacagaacaatgacagccacatagaagccaca
cagatagcagagctggaggagaagtacttcccagatgagtcacctcatggtctcttcagg
atatgccggatgtacctggacaactgcctggtgtttggagacagctccactctcatcccc
aactgtagtctggatctcctcgctctggagcttcgcttctttggagccaccctggacgca
aagcttgatcctgaggtctcccatgtcatcgttgataagaaagatttgagtcgtctccca
cagctgcgggaggtgaggaagcgccgaactcgtaaattccacatcgttacagaagactgg
gtacgtgcatgcatggaggaaggcggccttgtcaacgaacgcagcttcgagccgcaagtc
ccatcatga
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