Heliorestis convoluta: FTV88_2917
Help
Entry
FTV88_2917 CDS
T06277
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hcv
Heliorestis convoluta
Pathway
hcv03030
DNA replication
hcv03410
Base excision repair
hcv03420
Nucleotide excision repair
hcv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FTV88_2917 (ligA)
03410 Base excision repair
FTV88_2917 (ligA)
03420 Nucleotide excision repair
FTV88_2917 (ligA)
03430 Mismatch repair
FTV88_2917 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcv03032
]
FTV88_2917 (ligA)
03400 DNA repair and recombination proteins [BR:
hcv03400
]
FTV88_2917 (ligA)
Enzymes [BR:
hcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FTV88_2917 (ligA)
DNA replication proteins [BR:
hcv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FTV88_2917 (ligA)
DNA repair and recombination proteins [BR:
hcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FTV88_2917 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FTV88_2917 (ligA)
MMR (mismatch excision repair)
DNA ligase
FTV88_2917 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FTV88_2917 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH_8
HHH_3
BRCT_2
Zn_ribbon_NUD
GT4-conflict
DUF2497
Motif
Other DBs
NCBI-ProteinID:
QGG49006
UniProt:
A0A5Q2N5U9
LinkDB
All DBs
Position
complement(2804074..2806104)
Genome browser
AA seq
676 aa
AA seq
DB search
MIESLPKIASLTQEEARQKIEALVQEIEEHNYRYYVLDNPTIDDAAYDQLLRELQELEKH
YPDLIEPHSPTQRVGGKALEAFGTVKHRHPLLSLANAFTAQDLRDFDRRVRERASQPITY
VVEPKIDGLTVVLHYQKGLFVGGATRGDGETGEDITENLKTLRTLPLRLREQWPALEVRG
EAFISKEDFAQLNREREEKEEPLFANPRNAAAGSLRQLDPKVTAQRPLRVYLYTILHVEG
PTVKEHKEALKLLEKAGLPVNQEQKHCKTIEEAIAYCESWIEKRHQLPYEIDGMVVKVNE
VEEYEKLGVTAKSPRYAIAFKFPAEQVVTRIRNIVIGVGRTGVLTPTAELEPVRVAGTTV
SRASLHNEDLIREKDIRIGDYVLLQKAGDIIPEVLSVLKEKRKGDEKPFAMPERCPECGE
PVSRLDGEVALRCTSSACPAQAIEGLIHFASRDAMNMEGVGPALLEQFWKAGLVKQPTDL
YRLKTSELRNLERFGEKSATKTVKAIEESKSRGLPALLFALGIRHVGQKAAKTLAQHFGS
IDGLMKATEEELQSIEEIGPKMAQSIRSYFSNQANQQLIEELKELGLRLEMNQEEKRAEQ
SLQGLTFVLTGTLETLSRKEAQTLLEERGAKVSSSVSKKTSFVVAGAEAGSKLEKAQALQ
VPVLTEKEFLQRIGLS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatcgcttccaaaaatagcaagccttacccaagaagaagcaagacaaaaaata
gaagcattggttcaggaaattgaagaacataattaccgctactatgttctcgacaaccca
accattgacgatgctgcctatgaccaattgcttcgagagctacaagaattagaaaagcac
tatcccgatctaatagaacctcactcgccgacgcaacgagtgggcggaaaagctttagaa
gcttttggcaccgtaaaacatcgacaccccttattgtcactggccaacgcctttacagcc
caggacttacgggactttgaccggcgggtccgagaaagagcgagccagcctatcacctat
gtagtagagcccaaaattgacggcttaacggtggtgctccactatcaaaaaggccttttc
gtcggaggcgcaacgcgtggtgatggcgagacgggagaagatattacagaaaatcttaag
acccttcgtacgctaccactgcgtttgcgtgagcaatggcctgctttggaagtgcgaggc
gaagcctttatctccaaagaggactttgcccagctcaacagagaacgagaagaaaaagaa
gaacctctttttgccaatcctcgtaacgctgctgccggttccttacgacagctcgatccg
aaagtaacggcccaaaggcctctgcgcgtctatctttatactatcttacatgtagaaggc
ccaacggtgaaagaacataaagaggctctcaaacttttagaaaaagcaggacttcccgtt
aaccaagagcagaagcattgcaagaccattgaagaagccattgcgtactgtgaaagctgg
attgagaagcgccatcaacttccctacgaaatcgatggcatggttgtaaaagtaaatgaa
gtagaagaatatgagaagctcggcgtaacagccaaaagcccccgctatgccattgccttt
aagttcccggcagagcaagtcgtaactcgaattcgcaacatcgtcatcggcgtaggaaga
acgggcgtcttaacaccaacggcagagctagaacctgtccgcgttgccggtactacggtc
agccgcgcgagcttgcacaatgaagacttaatccgagagaaagacattcgcattggcgac
tatgtgctcttacaaaaagcaggcgacattattccagaagtgctttctgtactgaaagaa
aaaagaaagggcgatgaaaagccctttgccatgccagagcgatgccccgaatgtggagag
cccgtaagtcgcctagacggagaagtcgctttgcgttgcacctcatcagcttgtccggcc
caagcgattgaaggcctcattcactttgcttctcgcgatgccatgaacatggaaggggta
ggcccagctttgcttgagcaattctggaaagccggcctcgtcaagcaacctactgatctc
tatcgtcttaaaacttctgagcttcgtaatttagagcgattcggagaaaagtcagcgaca
aaaacggtaaaagcgatagaagaaagcaaatcaagaggtttgccagcccttctttttgca
ttaggcattcgccatgtaggacagaaagcagccaaaacattggcccagcatttcggttct
atcgatggcctgatgaaggctacagaagaagaactacaaagtatagaagaaatcggaccc
aagatggcccagtcgattcgctcttacttttccaatcaggcgaatcaacagttgattgaa
gaattgaaagagctaggcttgcgcttagaaatgaatcaagaagagaaaagggcagaacaa
agtttacaaggccttacctttgtcttaacaggaacattagaaacgcttagtcgcaaagaa
gcgcagactctcttagaagagcgtggcgccaaagtctcgtcatcggtaagcaaaaaaacc
agctttgtcgtcgccggcgcagaagcaggatcaaagttagaaaaggcacaagctttgcaa
gtgcctgtgctcacagaaaaagagttccttcaacgaattggtctttcctag
DBGET
integrated database retrieval system
