Hymenobacter canadensis: O3303_04675
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Entry
O3303_04675 CDS
T09156
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hcw
Hymenobacter canadensis
Pathway
hcw03030
DNA replication
hcw03410
Base excision repair
hcw03420
Nucleotide excision repair
hcw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O3303_04675 (ligA)
03410 Base excision repair
O3303_04675 (ligA)
03420 Nucleotide excision repair
O3303_04675 (ligA)
03430 Mismatch repair
O3303_04675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcw03032
]
O3303_04675 (ligA)
03400 DNA repair and recombination proteins [BR:
hcw03400
]
O3303_04675 (ligA)
Enzymes [BR:
hcw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O3303_04675 (ligA)
DNA replication proteins [BR:
hcw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O3303_04675 (ligA)
DNA repair and recombination proteins [BR:
hcw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O3303_04675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O3303_04675 (ligA)
MMR (mismatch excision repair)
DNA ligase
O3303_04675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O3303_04675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
WBA42857
UniProt:
A0ABY7LR08
LinkDB
All DBs
Position
complement(1089818..1091956)
Genome browser
AA seq
712 aa
AA seq
DB search
MTTDLQARITALTERLHHLNYQYYQRDISEIPDQEFDQLLAELAELEKQHPELAHPNSPT
QRVGGTITKQFPTAAHRYPMLSLGNTYSEADLREFDERVQKGLEGADYAYVCELKFDGVA
MSLTYEAGQLTQGVTRGDGTRGDVVTSSVRTIKNLPLHLRTAGPAQPPEFEVRGEIFMPL
PVFAELNAEREENGEALLANPRNAASGALKLQDSALVAARRLRFYAYSFLMPGRSSLPTH
SASLEALSAWGLPVSDTWRRCGSIAEVLDFVHEWDKKRFTLPVATDGIVIKIDDFRQQEL
LGYTAKSPRWAIAYKYPAEAGRTRLRDVQYQVGRTGAVTPVALLDPVPLAGTVVKRASMH
NANQIAALDIRLNDMVFVEKGGEIIPKITGVDFTARPEDSQPIVYPTACPACNTPLIRPE
GEAHFRCPNDRGCPPQRKAKLEHYVSRKALNIDGLGAETVGRFFDLGLVTDAASLYDLPA
KAEELAQLDRMGEKSVQRLLAGLEQSKLVPFDQVLFGLGIRYVGETVAEKLANHYRTMEA
LMVATATELAAVPEVGGVIAESAAAWFQEPQNQELVARLRAAGVQLELTGEAPQAMSNRL
EGLTFVLSGVFELHSRDELQALIEAHGGKITGSISKKLSYLVAGDKMGPAKREKATGFKV
PIISEAELLAMLPAGPEATSAPAETADAAEDSAPSASNPTPIQGTGTQTSLF
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacctccaggcccgcattacggccctcaccgagcgcctgcaccacctcaac
taccagtactaccagcgcgacatcagcgagattcccgaccaggagttcgaccagctgctg
gccgagctggccgagctggaaaagcagcacccggagctggcccaccccaactcgcccacc
cagcgcgtgggcggcaccatcaccaagcagttcccgacggccgcgcaccgctaccccatg
ctcagcctcggcaacacctactccgaggccgacctgcgcgagttcgatgagcgggtgcaa
aaaggcctggaaggcgccgactacgcctacgtctgcgagctgaagttcgacggcgtggcc
atgagtctcacctacgaggccggccagctcacgcagggggtcacgcgcggcgacggcacc
cgcggcgacgtggtgaccagcagcgtgcgcaccatcaagaacctgccgctgcacctgcgc
acggccggcccggctcagccgccggagtttgaggtgcgcggcgaaatattcatgcccctg
ccggtgtttgcggagctgaacgccgagcgcgaggaaaacggcgaggccctgctggccaac
ccgcgcaacgccgccagcggtgccctcaagctccaggattcggcgctggtggcggcccga
cggctgcgcttctacgcctactcgtttctgatgccgggccgcagcagcctgcccacgcac
agcgcctcgctggaagcgttgagcgcctggggcctgcctgtgtcggacacgtggcggcgg
tgcggctccattgctgaggtgctggatttcgtgcacgagtgggacaaaaagcgcttcacg
ctgcccgtcgccaccgacggcatcgttatcaagattgacgatttccggcaacaggagctg
ctgggctacacggccaaaagcccgcgctgggccattgcctacaagtacccggcggaagcg
ggccgcacccgcctgcgcgatgtgcagtaccaggtgggccgcaccggcgccgtcacgccc
gtggccctgctcgaccccgtgccgctggccggcaccgtggtcaagcgcgcctccatgcac
aacgccaaccagattgcggccctcgatatccgcctcaacgatatggtgttcgtggagaaa
ggcggcgaaatcatccccaaaatcaccggcgtagatttcacggcccgccccgaagacagc
cagccaatcgtgtaccccacggcctgccctgcctgcaacacacccctgatccggcccgag
ggcgaggcccacttccgctgccccaacgaccggggctgcccgccccagcgcaaggccaag
ctggagcactacgtgtcgcgcaaggcgctgaacatcgacggactgggcgccgaaaccgtg
ggccgcttcttcgacctgggcctcgtgacggacgcggccagcctctacgacctgcccgcc
aaagccgaggagctggcccagctagaccggatgggcgagaaatcggtgcagcggctgctg
gcggggctggagcaaagcaagctggtgcccttcgaccaggtgctgttcggcttgggtatt
cggtacgtgggcgaaaccgtggccgagaagctggccaaccactaccgcaccatggaggcc
ctgatggtcgctacggccaccgagctggccgccgtgccggaggtgggtggcgtcattgcc
gagtcggcggcggcgtggtttcaagagccgcagaaccaggagttggtggcgcggctgcgg
gcggcgggcgtgcagctagaactcaccggcgaggcaccgcaagccatgagcaaccgcctc
gaaggcctcacgttcgtgctgtcgggcgtgtttgagctgcactcccgcgacgaactgcag
gccctgattgaggcacacggcggcaaaatcacgggcagcatcagcaagaagctcagctac
ctggtggccggcgacaaaatgggcccggccaagcgcgaaaaagccaccggcttcaaagtg
cccatcatcagcgaagccgagctgctggccatgctgcccgccggcccggaagccacttca
gctcccgcggaaactgccgacgctgcagaagactctgctccgtcagcgtcaaacccaacg
ccgatccaaggcaccggaacgcagacttcgctgttctag
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