Hydrogenophaga crocea: G9Q37_06650
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Entry
G9Q37_06650 CDS
T08489
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hcz
Hydrogenophaga crocea
Pathway
hcz03030
DNA replication
hcz03410
Base excision repair
hcz03420
Nucleotide excision repair
hcz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G9Q37_06650 (ligA)
03410 Base excision repair
G9Q37_06650 (ligA)
03420 Nucleotide excision repair
G9Q37_06650 (ligA)
03430 Mismatch repair
G9Q37_06650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcz03032
]
G9Q37_06650 (ligA)
03400 DNA repair and recombination proteins [BR:
hcz03400
]
G9Q37_06650 (ligA)
Enzymes [BR:
hcz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G9Q37_06650 (ligA)
DNA replication proteins [BR:
hcz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G9Q37_06650 (ligA)
DNA repair and recombination proteins [BR:
hcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G9Q37_06650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G9Q37_06650 (ligA)
MMR (mismatch excision repair)
DNA ligase
G9Q37_06650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G9Q37_06650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
QIM51839
UniProt:
A0A6G8IFF0
LinkDB
All DBs
Position
1360515..1362599
Genome browser
AA seq
694 aa
AA seq
DB search
MTSLDLFAAAPTPAERAAELRAQLHRHAHLYYTLDQPEIPDAEYDRLFRELQAIEAEHPE
LLTPDSPTQRVGGTVLKTLPPVRHAVPMLSIRTETDTEASGAAAFDARVRRELGLGEADP
PVEYVAELKFDGLAMSLRYERGVLVCAATRGDGENGEDVTHNVRTIGQIPLRLPEGVPEV
LEVRGEVYMRRDDFEALNERQRQKIAAGAKGEKTFVNPRNAAAGAVRQLDSRIARERPLS
FFAYGWGEVVGDAAPPATQFDWLMRLKAWGFPVAEQTAVCLGAEALVAFHRRIGEARDAL
PYDIDGVVYKVNPLALQQRLGFVTREPRWAVAHKYPAQEQLTTVQAIDVQVGRTGKLTPV
AKLAPVFVGGVTVTNATLHNELEARRKDVRVGDTVVVRRAGDVIPEVVSVLADKRAGDPP
PFTMPTHCPVCGSDAVREEGEADHRCTGGLFCAAQRKQAILHYAQRRALDIEGLGDKLVE
QLVDSGLIKTLPDLYKLGFTALAALERMAEKSAQNVLDALEKSKHTTLPRFLFGLGIRHV
GEATAKDLARHFGGIDRIMDASVDALLQVNDVGPVVAQSIRTFFDQPHNREVVEQLRAAG
VQWPEGEGAQNTPQPLLGKTFVLTGTLPTLGREDAKALLEAAGAKVAGSVSKKTDYVVAG
AEAGSKLEKAQALGVAVIDEAAMLALLNPPGDAA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgctagacctgttcgcggccgcgcccacgccggccgagcgcgcggccgagctg
cgcgcgcagctgcaccgccacgcgcacctctactacaccctcgaccagcccgagatcccc
gacgccgaatacgaccggctgttccgcgagctgcaggcgatcgaggccgagcaccccgaa
ctgctcacgcccgactcgcccacccagcgcgtgggcggcacggtgctcaagacgctgccg
ccggtgcgccacgcggtgcccatgctgagcatccgcaccgagaccgacaccgaggccagc
ggcgctgccgccttcgacgcgcgtgtgcgccgcgaactcggcctgggcgaggcggacccg
ccggtcgaatacgtggccgaactcaagttcgacggcctggccatgagcctgcgctacgag
cgcggcgtgctggtgtgcgcggccacgcgcggcgacggcgagaacggcgaagacgtgacg
cacaacgtgcgcaccatcggccagatccccttgcggctgcccgagggcgtgcccgaggtg
ctcgaagtgcgtggcgaggtctacatgcgccgcgacgatttcgaggccctgaacgaacgc
cagcgccagaagatcgccgcgggggccaagggcgagaagaccttcgtgaacccgcgcaac
gccgcggccggcgcggtgcgccagctcgactcgcgcatcgcgcgcgaacgcccgctgagc
ttcttcgcctacggctggggcgaggtggtgggcgacgccgcgccgccggccacgcagttc
gactggctcatgcgcctgaaggcctggggctttccggtggccgaacagaccgccgtgtgc
ctgggcgccgaggcgctggtggccttccaccgccgcatcggcgaggcgcgcgacgcgctg
ccctacgacatcgacggcgtggtctacaaggtcaatccgctggccctgcagcagcgcctg
ggcttcgtcacgcgcgagccgcgctgggccgtggcccacaagtacccggcgcaagagcag
ctcaccacggtgcaggccatcgacgtgcaggtgggccgcaccggcaagctcacgcccgtg
gccaagctcgcgccggtgttcgtgggcggcgtcaccgtcaccaacgccacgctgcacaac
gaactcgaagcgcgccgcaaggacgtgcgcgtgggcgacaccgtggtggtgcgccgcgcg
ggcgacgtgattcccgaggtggtctcggtgctggccgacaagcgcgcgggcgatccgccg
cccttcaccatgcccacgcattgcccggtctgtggcagcgacgccgtgcgcgaagagggc
gaggccgaccaccgctgcaccggcgggctgttctgcgccgctcagcgcaagcaggccatc
ctgcactacgcgcagcggcgcgcgctcgacatcgaaggcctgggcgacaagctcgtggag
cagctggtggacagcggcctcatcaagaccctgcccgacctctacaagctcggcttcacc
gcgctcgcggcgctcgaacgcatggccgagaagtcggcgcagaacgtgctcgacgcgctc
gagaagagcaaacacaccacgctgccgcgcttcctgttcggcctgggcatccgccacgtg
ggcgaggccacggccaaagacctcgcgcgccacttcggcggcatcgaccgcatcatggac
gcgagcgtggacgcgctgctgcaggtcaacgacgtgggcccggtggtggcgcagagcatc
cgcaccttcttcgaccagccgcacaaccgcgaggtggtggagcagctgcgcgccgcgggc
gtgcagtggcccgaaggcgagggcgcgcagaacacgccgcagccgctgctgggcaagacc
ttcgtgctcacgggcaccctgcccacgctgggccgcgaagacgccaaggccctgctcgaa
gccgcgggcgccaaggtcgcgggctcggtcagcaagaagaccgactacgtggtggccggc
gccgaggccggcagcaagctggagaaggcgcaggcgctcggcgtggcggtgatcgacgag
gcggcgatgctggcgctgctcaacccccctggagacgctgcatga
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