Natronorubrum daqingense: BB347_13405
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Entry
BB347_13405 CDS
T04679
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hda
Natronorubrum daqingense
Pathway
hda03030
DNA replication
hda03410
Base excision repair
hda03420
Nucleotide excision repair
hda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB347_13405 (ligA)
03410 Base excision repair
BB347_13405 (ligA)
03420 Nucleotide excision repair
BB347_13405 (ligA)
03430 Mismatch repair
BB347_13405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hda03032
]
BB347_13405 (ligA)
03400 DNA repair and recombination proteins [BR:
hda03400
]
BB347_13405 (ligA)
Enzymes [BR:
hda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB347_13405 (ligA)
DNA replication proteins [BR:
hda03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB347_13405 (ligA)
DNA repair and recombination proteins [BR:
hda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB347_13405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB347_13405 (ligA)
MMR (mismatch excision repair)
DNA ligase
BB347_13405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB347_13405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
APX97522
UniProt:
A0A1N7F440
LinkDB
All DBs
Position
complement(2752053..2754155)
Genome browser
AA seq
700 aa
AA seq
DB search
MPAADENAEDANPYVRDPPTEFEPVDDLSAADAERDVELLRAAVREHDRRYYVENDPIVA
DRTYDALFARLQDLEDAFDLSHPDSPTRSVGGEPIDAFETVEHVAPMLSIDQSGEAADVR
EFDERVRRELRASEHADDLQYVCEPKFDGVSMEFVYEDGSLERAVTRGDGREGDDVTRNA
RTIGSVPQQLHGDYPEFLAVRGEVYMPKDAFQAHNRERIERGEEPFANPRNATAGTIRQL
DPSIVADRPLEVFYFDVLEASDLEDSHSAELERFPKWGLRVTDHIEYADDIDEAIDYRDR
MLELRDDLNYEIDGTVIKVDDREAREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVG
RTGRLTPVALLEPVDVGGVTVSRASLHNPEEIAEKNVNVGDTVRVQRAGDVIPYVEEVVE
KGSEGHYEFPEACPVCDSAVERDGPMAFCTGGLACDAQLRRSIEYYASDDGLDLEGLGEK
SVRQLVDAELLESVADLYELEREELTDLEGWGETSAENLLSELEAAREPPLADFCSALGI
PHVGPTTARELAREFATFEAFRETAETEPERLEGVDDVGETVAQQLHEFFASDKNAAAVD
DLLEHVSPQEADTDAGGEELEELTFVFTGSLSDVTRGEAQETVEAHGANATGSVSGNTDY
LVVGESPGQTKRDDAEANDVPIVDEDEFRELLAEYGIALE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgccgacgagaacgcggaggacgccaacccgtacgtgagagatcccccgacc
gagttcgagccggtcgacgacctctcggcggccgacgccgaacgcgacgtcgaactgttg
cgcgcggccgtccgcgagcacgaccgccggtactacgtcgagaacgatccgatcgtcgcc
gatcgaacctacgacgccctcttcgcgcggttgcaagacctcgaggacgcgttcgacctc
tcccatccagacagtccgaccagaagcgtcgggggcgaaccgatcgacgcgttcgagacg
gtcgagcacgtcgcgccgatgctctcgatcgaccagagcggcgaggccgcggacgtacgg
gagttcgacgagcgcgtccgcagggagttgcgcgccagcgagcacgcggacgacctccag
tacgtctgcgaacccaagttcgacggcgtctcgatggagttcgtctacgaggacggttcg
ctcgagcgggcggttacccgcggcgacggtcgcgagggcgacgacgtgacgcgaaacgcc
cggacgatcgggtcggtgccccaacagctccacggcgactaccccgaattcctcgcggtc
cgcggcgaggtgtacatgcccaaggacgccttccaggcgcacaatcgcgagcggatcgag
cgcggcgaggagccgttcgcgaaccctcgaaatgcgactgcggggacgatccgccaactc
gacccctcgatcgtcgccgaccggcccctcgaggtgttctacttcgacgtgctcgaggcc
agcgacctcgaagacagccacagcgcggaactcgagcgcttccccaagtgggggctccga
gtgaccgaccacatcgaatacgctgacgacatcgacgaggcgattgactaccgcgaccga
atgctcgagttgcgcgacgacctcaactacgagatcgacggcaccgtcatcaaggtcgac
gaccgggaggctcgcgaggaactgggccgcacggcgcgccacgaccgctacgcgttcgcc
tacaagttccccgcacgcgcggaggtcaccccgatcgtcgacgtggcggtgcaggtgggc
cgaactggtcgactcacgcccgtcgccctcctcgagccggtcgacgtcggcggtgtgacg
gtctctcgagcgagcctgcacaaccccgaggagatcgcggagaagaacgtcaacgtcggg
gataccgttcgcgtgcagcgggcgggcgacgtaatcccctacgtcgaggaggtcgtcgag
aagggaagcgaaggtcactacgagttccccgaggcctgccccgtctgtgacagcgccgtc
gagcgagacggcccgatggccttctgtacgggcggcttagcgtgtgacgcccagcttcgc
cgctccatcgagtactacgcgagcgacgacgggctggacctcgagggcctcggcgagaag
agcgtccgacaactcgtcgacgccgagttattggaatccgtggcggacctctacgaactc
gagcgtgaggagctgaccgacctcgaggggtggggtgaaacgagcgccgagaacctcctg
tccgaactcgaggccgcccgtgagccaccactcgccgacttctgttcggcgctcggcatt
ccacacgtcggacccacgacggcccgcgaactcgcccgcgagttcgccacgttcgaggcg
ttccgcgagacggctgagaccgagccggagcgactcgagggggtcgacgacgtcggcgag
accgtcgcccaacagctccacgagttcttcgcgagcgacaaaaacgccgcggccgtcgac
gacctgctcgagcacgtctcaccgcaggaggcggacaccgacgcaggtggcgaggagctc
gaggaactgacgttcgtcttcacggggtcactctccgacgtcactcgcggcgaggcacag
gagacggtcgaagcccacggcgcgaacgcgacgggtagcgtttcggggaacacggactat
ctcgtcgtcggcgagagccccggccagacgaaacgcgacgacgccgaggccaacgacgtc
ccgatcgtcgacgaagacgagttccgcgagctactagcggagtacggaatcgcgctcgag
tga
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integrated database retrieval system
