Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1596
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Entry
HDEF_1596 CDS
T00911
Symbol
nth
Name
(GenBank) DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HDEF_1596 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1596 (nth)
Enzymes [BR:
hde01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HDEF_1596 (nth)
DNA repair and recombination proteins [BR:
hde03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HDEF_1596 (nth)
Prokaryotic type
HDEF_1596 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACQ68208
UniProt:
C4K6L5
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All DBs
Position
complement(1445505..1446152)
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AA seq
215 aa
AA seq
DB search
MNQKKRREILARLRDQNPQPRTELVYSTPFELLISVLLSAQATDLSVNKATSKLYPVANT
PKALLSLGVNGLKEYIKSIGLFNTKAENIIKTCSLLLEKYQGAVPEDRAALESLPGVGRK
TANVVLNTAFDWPTIAVDTHIFRVCNRTKFASGQNVVLVEKKLLKVVPEEFKKDCHHWLI
LHGRYHCIARKPRCGSCIIRDLCEFKEKTELTASF
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaaaaaacgcagggaaattttagctcgtttacgtgatcaaaatcctcagcct
cgtactgaattagtgtatagcactccgtttgaattgttaatatcagtcttgctttcagct
caagccactgatctaagtgtgaataaagctacctcaaaactctatcctgtggcgaataca
ccaaaggcgcttttatcattaggtgtcaatgggctcaaagaatatattaaaagcattgga
ttatttaataccaaagccgaaaacattattaaaacctgttctctgttgctggaaaaatac
caaggcgccgtgcccgaagatagagcggcattagaatctctgcctggtgtcggtcgcaaa
acagccaatgtggttcttaataccgcttttgattggccgactattgctgttgatactcac
atttttcgtgtttgtaaccgaacgaaattcgcatctggtcaaaatgttgttttggttgaa
aaaaaattgcttaaggtcgtaccagaggaatttaaaaaagattgtcaccattggttgatt
ctccacgggcgataccattgtatcgcgcgtaagccacgttgtggctcttgtatcattcgg
gatttatgtgaatttaaagaaaaaacagaattgacggcttcgttctaa
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