Halalkaliarchaeum desulfuricum: AArcSl_3059
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Entry
AArcSl_3059 CDS
T06283
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hdf
Halalkaliarchaeum desulfuricum
Pathway
hdf03030
DNA replication
hdf03410
Base excision repair
hdf03420
Nucleotide excision repair
hdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AArcSl_3059 (ligA)
03410 Base excision repair
AArcSl_3059 (ligA)
03420 Nucleotide excision repair
AArcSl_3059 (ligA)
03430 Mismatch repair
AArcSl_3059 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdf03032
]
AArcSl_3059 (ligA)
03400 DNA repair and recombination proteins [BR:
hdf03400
]
AArcSl_3059 (ligA)
Enzymes [BR:
hdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AArcSl_3059 (ligA)
DNA replication proteins [BR:
hdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AArcSl_3059 (ligA)
DNA repair and recombination proteins [BR:
hdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AArcSl_3059 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AArcSl_3059 (ligA)
MMR (mismatch excision repair)
DNA ligase
AArcSl_3059 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AArcSl_3059 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
HHH
BRCT
DNA_ligase_ZBD
5_3_exonuc
RNA_pol_A_CTD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AUX10668
UniProt:
A0A343TNJ6
LinkDB
All DBs
Position
3109798..3112113
Genome browser
AA seq
771 aa
AA seq
DB search
MSDEVEDVHYAEPDNPYLRDAPAEFEPIEEIDAETAREQAELLREAIREHDYRYYVLADP
IVADETYDRLFARLEELESAFDLATDDSPTQRVGGEPLDELETVEHTAPMLSIDQSTEAD
DLREFDDRVRRELQEAGFDDPTYLCEPKFDGLSVEIVYRDGRYVRAATRGDGQRGDDVTE
QVRTIRAVPMRLRGDPPSVLAVRGEVYMPKDDFRAYNRERVEAGEEPFANPRNAAAGTLR
QLDPDIVAERPLSIYFFDVLAWETDPDPDALPDALPEASADGSRDEESEAAAGADDQLTL
DALGEVVDSEDETESRDDGSQLSDAGVRPGGREQPATHAAEFSAFREFGLRVAHEHVEQV
DDIEAAVDYRDRMMELREELPFEIDGTVVKVNDREACEHLGATARSVRWAFAYKFPARSG
ETTIRDVVVQVGRTGRLTPVALLDPVEVGGVTVSRATLHNPSEIETLGVDVGDRVAVKRA
GDVIPQVTEVLEHGSEGHFEFPDECPVCGSSVERDGPLAYCSGGFGCPAQLERTIEHYTS
RQALDIDGLGPERVEQLREAGLVESLADLYRLDSDDLADLEGWGEKSAENLRSELEETRE
PSLADFLTGLGIPDVGASTATELARAFGSLAAVMDADREELESVPDVGPEVARKIRDFFD
TEENRAAIEELTEYVEPQSLEVDDAGDELSGLTFVFTGSLSIPRRDASDLLERYGANVTS
SVSGNTDYLVVGDDPGTSKREDADANDVDEIGEDELMELLADRGIEWPGSR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaggtcgaagacgtccactacgccgaaccggacaacccctatctccgggac
gcgccggcggaattcgagccgatcgaggagatcgacgccgagacggcacgcgagcaggcc
gaactgttgcgcgaggcgatccgggagcacgactaccgctactacgtgctcgcggacccg
atcgtcgcagacgagacgtacgatcggctgttcgcccggctcgaggagctcgaatcggcg
ttcgaccttgcgaccgacgactcgccgacccagcgagtcggcggggaaccgctcgacgaa
ctggagacggtcgagcacactgcgccgatgctgtcgatcgaccagtcgacggaagccgac
gacctccgggagttcgacgatcgcgttcgccgtgagctgcaggaagcgggcttcgacgac
ccgacgtatctgtgcgaaccgaagttcgacggcctctcggtggagatcgtctaccgcgac
ggcagatacgtccgtgcagcgacccgaggggacggacagcgcggcgacgacgtcaccgaa
caggtccggacgatccgggcggtgcccatgcgattgcggggggatcccccctcggtcctg
gccgtccgcggggaggtgtacatgccgaaggacgacttccgggcgtacaaccgcgaacgc
gtcgaggcgggcgaggagccgttcgcaaacccccgcaacgcggccgccggaacgctccga
cagctcgacccggacatcgtcgccgagcgaccactctcgatctacttcttcgacgtgctc
gcctgggagacggatccggatccggacgcgcttcccgacgcgttaccggaagcgagtgct
gacggctcgcgggacgaggaatccgaggctgctgccggggcggacgaccagctgacgctc
gatgccctcggtgaggtggtcgactccgaagacgagaccgagagccgagacgacggaagc
cagctatcggacgccggggtccgccccggcggtcgggaacagcccgcgacccacgccgcg
gagttttcggcgttccgggagttcgggctccgggtggcccacgagcacgtcgaacaggtc
gacgacatcgaggcggcggtcgactaccgggatcgaatgatggaactccgcgaggagctc
ccgttcgaaatcgacggcacggtggtcaaggtaaacgaccgggaggcctgcgaacatctc
ggggcgaccgcgcggtcggtccggtgggcgttcgcctacaagttccccgccagaagcggc
gaaacgacgatccgggacgtggtggttcaggtcggccggacggggcgtctcaccccggtc
gcgctgctcgatccggtcgaggtcggcggggtgaccgtctcgcgggcgacgctgcacaac
cccagcgagatcgagacgctgggcgtcgacgtgggcgatcgggtggccgtaaagcgggca
ggggacgtcatcccgcaggtgacggaggtgctcgaacacggatcggaggggcacttcgag
ttccccgatgagtgtccagtctgcgggagttcggtcgagcgcgacggtccactggcgtac
tgcagcggcgggtttggctgtccggcccaactcgaacgcacgatcgaacactacacgagc
cgacaggcgctcgacatcgacgggctcggtcccgaacgtgtcgaacagctccgggaggcc
gggctggtggagtcgttggccgacctttaccggctggattcggacgacctcgccgatctc
gaggggtggggggagaagagtgccgagaacctgcgttcagaactcgaggagactcgggaa
ccttccctcgcggacttcctcaccgggctgggtatccccgacgtgggcgcgtcgacggca
acggagctcgcccgagcgttcgggagcctcgcggccgtgatggacgccgaccgcgaggaa
ctcgagtcggtgcccgacgtcgggcccgaagtcgcccggaagatcagggacttcttcgac
accgaggagaaccgggcggcgatcgaggagctcacggagtacgtcgaaccccagtccctc
gaggtcgacgacgccggcgacgaactctcggggctgacgttcgtgttcacggggtcgctg
tcgataccgcgacgcgacgcgagcgatctactcgaacggtacggcgcgaacgtcacctcg
agcgtctccggcaacactgactatctcgtcgtcggcgacgacccgggaacatcgaagcgt
gaagatgccgatgccaacgacgtagacgagatcggggaggacgagttgatggaactgctg
gcggatcgagggatcgagtggccgggctctcggtga
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