Hartmannibacter diazotrophicus: HDIA_2896
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Entry
HDIA_2896 CDS
T05217
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03030
DNA replication
hdi03410
Base excision repair
hdi03420
Nucleotide excision repair
hdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDIA_2896 (ligA)
03410 Base excision repair
HDIA_2896 (ligA)
03420 Nucleotide excision repair
HDIA_2896 (ligA)
03430 Mismatch repair
HDIA_2896 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdi03032
]
HDIA_2896 (ligA)
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_2896 (ligA)
Enzymes [BR:
hdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HDIA_2896 (ligA)
DNA replication proteins [BR:
hdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HDIA_2896 (ligA)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HDIA_2896 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDIA_2896 (ligA)
MMR (mismatch excision repair)
DNA ligase
HDIA_2896 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HDIA_2896 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DZR_2
HHH
Motif
Other DBs
NCBI-ProteinID:
SON56437
UniProt:
A0A2C9D7Z9
LinkDB
All DBs
Position
1:complement(3106677..3108839)
Genome browser
AA seq
720 aa
AA seq
DB search
MSHPAGPPVDQLTELEAAGELERLARLMAHHDQLYYSKDAPEISDAEYDELKARNQAIEA
RFPHLIRPDSPSLKVGAAPSEAFSQVTHARPMLSLDNVFSDEDVVDFVAGVRRFLGLGPD
AELVFTAEPKIDGLSMSLRYEKGRLVTGATRGDGTTGENVTANIRTINEIPQVLPAGAPD
VVEVRGEVYMAKAAFLDLNARMAERGGKVFANPRNAAAGSLRQLDPKVTASRPLRFFAYA
WGEMTSIPAGTQYDVVEAFKSWGFQVNPLMARCVSTDDLLAHYHEIETLRGSLDYDIDGV
VYKVDRLDLQERLGFRSRTPRWATAHKFPAQQATTVLTAIDIQVGRTGALTPVARLEPVT
VGGVVVTNATLHNEDYIKGIGNSGEPIREGRDIRVGDTVIVQRAGDVIPQIVDVVLDKRP
ADAVAYVFPDRCPICGSHAVREEGEAKHRCTGGLVCSAQQQERLRHFVSRNALDIEGLGD
KQIAFFFEADDDAMRIRTPADIFTLEARQEASQLSKLKNREGWGETSVGNLFAAIRARKA
PALSRFIFGLGIRHVGETNAKRLARHYTSWSAFEAGARAAVPPVSKGDKGNDAWAELVGI
EGIGSVVAEAVVDFFAEEHNIEVLTALLAEVIPQDEEAIVASGSPVAGKTVVFTGSLEKM
TRDEAKATAERLGAKVSGSVSKKTDLVVAGPGAGSKLAKATEFGIEVIDEDAWLELVRGA
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatcccgccggtccgcctgtcgatcagctcaccgaactcgaagcggccggcgaa
ctggagcggctggcgcgcctgatggcgcatcatgaccagctttattactcgaaagacgcg
ccggaaatctcggatgccgaatacgacgagctgaaggcccgcaaccaggccatcgaggcg
cgatttccgcatctgatccggccggattcgccgtcactgaaggtcggcgccgcgccctcc
gaggccttcagtcaggtgacgcacgcccggccgatgctgtcgctcgacaacgtcttttcc
gacgaggacgtggtcgacttcgtcgccggcgtgcggcgatttctggggctcggtccggat
gccgagctcgtctttacggcggaacccaagatcgacggcctctccatgagccttcgctac
gagaaggggcggctggtgacgggcgccacccgcggcgacggaacgacgggcgagaatgtc
accgccaacatccgcaccatcaacgagattccgcaggttctgccagccggcgcgcccgat
gtcgtggaggtgcgcggcgaggtctacatggccaaggcggcattcctggacctcaatgcc
cgcatggccgagaggggcggcaaggtctttgccaatccgcgcaacgcggcggcgggctcg
ctgcgtcagcttgatcccaaggtcaccgcgtcgcggccgctgcgcttctttgcctatgcc
tggggcgagatgaccagcattccggccggcacgcagtatgacgtcgtcgaggccttcaag
tcctggggattccaggtcaatcccctgatggcccgctgcgtgtccacggacgacctcctc
gctcactatcacgagatcgagaccctgcgtggcagcctcgactatgacatcgacggcgtc
gtctacaaggtcgaccggctggacctgcaggaacggctcggcttccgctcgcgcacaccg
cgctgggcaacggcgcacaagttcccggcccagcaggcgacgacggtgctcacggcgatc
gatatccaggtcggccgcacgggtgcgctgacgccggttgcgcggctcgaaccggtgacc
gtcggcggtgtcgtcgtcaccaatgcgacgctgcacaacgaggactacatcaagggcatc
ggcaattcgggcgagccgatccgcgaggggcgggacatccgcgtcggcgacacggtgatc
gtgcagcgggcgggcgacgtcattccgcaaatcgtcgacgtggtgctcgacaagcggcct
gccgatgcggtggcctacgtgtttccggatcgttgcccgatctgcggcagccatgcggtg
cgcgaggagggggaagccaagcaccgctgcaccggtggtctcgtctgctcggcgcagcag
caggagcggcttcgccatttcgtctcgcgcaacgcgctcgacatcgaggggctcggcgac
aagcagatcgccttcttcttcgaggcggatgacgacgcgatgcgaatccgcacgcccgcc
gacatcttcacgctggaggcccggcaggaggcctcgcagctttccaagctcaagaaccgc
gagggctggggcgagacctccgtcggcaatctcttcgccgccatccgggcgcgcaaggcg
ccggcgctctcccgcttcatcttcggtctcggcatccgccatgtcggcgagaccaacgcc
aagcggctcgcccgccactacacaagctggtcggccttcgaggccggcgcgcgcgcggcc
gtcccgcccgtctcgaagggcgacaagggcaacgacgcctgggccgagctcgtcggcatc
gagggcatcgggtcggtcgtggccgaggcggtcgtcgacttcttcgccgaggaacacaac
atcgaggtgctgacggcgcttctggccgaggtgatcccgcaggacgaggaggcgatcgtc
gccagcggttcaccggtcgcgggcaagacggtggtcttcaccggcagccttgaaaagatg
acccgcgacgaggccaaggcgacggcggaacggctcggcgccaaggtgtcgggatcggtg
tcgaagaagaccgatcttgtggtggccgggccgggggcggggtcgaagctcgcaaaggct
acggaattcggcatcgaggtcatcgacgaggatgcctggctggagctggtgcggggggcg
tga
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