Halobacterium sp. DL1: HALDL1_01530
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Entry
HALDL1_01530 CDS
T03878
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hdl
Halobacterium sp. DL1
Pathway
hdl03030
DNA replication
hdl03410
Base excision repair
hdl03420
Nucleotide excision repair
hdl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALDL1_01530 (ligA)
03410 Base excision repair
HALDL1_01530 (ligA)
03420 Nucleotide excision repair
HALDL1_01530 (ligA)
03430 Mismatch repair
HALDL1_01530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdl03032
]
HALDL1_01530 (ligA)
03400 DNA repair and recombination proteins [BR:
hdl03400
]
HALDL1_01530 (ligA)
Enzymes [BR:
hdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HALDL1_01530 (ligA)
DNA replication proteins [BR:
hdl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HALDL1_01530 (ligA)
DNA repair and recombination proteins [BR:
hdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HALDL1_01530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HALDL1_01530 (ligA)
MMR (mismatch excision repair)
DNA ligase
HALDL1_01530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HALDL1_01530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
HHH
BRCT
DNA_ligase_ZBD
BRCT_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AHG02457
LinkDB
All DBs
Position
complement(6952..9084)
Genome browser
AA seq
710 aa
AA seq
DB search
MPEAEAGADAPANNPYVRDPATSFARVENLSESEATEQARLLREAIHYHDYRYYVENDPV
VGDRTYDALFTRLQDLEDAFGLATPDSPTQRVGSEPLDELESVDHVVPMLSLDSSGEVDD
VREFATRVEREVGAVEFVCEPKFDGLSVEVVYEDGRFVRAATRGDGRTGEDVTENVRTID
SVPLRLRGDPPAFLAVRGEVYMPRDAFQAHNAERVERGEDAFANPRNAAAGTLRQLDPSV
TAERPLDCFFYDVLAAGESEADATADASRGGLDGGFDSHWDEHVALPEWGLKVDDRSERV
PDVDGAIEYRNRLGEERESLNYEIDGVVIKVDDRAQCAELGTTARHYRWAFAYKFPARAE
VTTVADVVVQVGRTGRLTPVALLDPVDVGGVTVSRASLHNRDEIEAMGVGIGDAVRVQRA
GDVIPYVAEVVEPHSEETIELPETCPRCGSPVEYEGPIAFCTGGLACPAQLVQGLSYFAD
VLDVEGLGERAAEQFVEDGVVENDVADIFDASVEEIAALEGWGETSARNLRDELEGARHP
PLGQFLAAIGIREVGPTVARDVAAEFGTLGAVLAADEDDFQSVPGVGSVVAGHLREFFDN
ERNRRVVERLRAETRLGEPEPAEREVASELDGLTFVFTGSVDGWTRGELQDLVQRHGGNA
VSSVSGNTDYLVVGESPGQTKRDDAAAEGVPELDAESFFDVLAERGVDAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggccgaggccggcgcggacgccccggcgaacaacccgtacgtccgcgacccg
gccacatcgtttgcgcgcgtcgagaacctctccgagagcgaggccacggagcaggcccgc
ctgctccgggaggccatccactaccacgactaccgctactacgtcgagaacgaccccgtc
gtcggcgaccggacgtacgacgcgctgttcacgcgcctccaggacctcgaggacgccttc
ggcctcgcgacgccggacagccccacgcagcgcgtcgggagcgagccgctcgacgaactc
gagagcgtcgaccacgtcgtgccgatgctgtcgctggactccagcggcgaggtcgacgac
gtccgggagttcgccacgcgcgtcgagcgggaggtcggagccgtcgagttcgtctgcgag
ccgaagttcgacggcctctccgtcgaggtcgtctacgaggacggccggttcgtgcgcgcc
gccacccggggcgacggccggaccggcgaggacgtcaccgagaacgtccgcaccatcgac
agcgtcccgctgcgcctgcgcggggacccgccggcgttcctcgcggttcgcggcgaggtg
tacatgccccgggacgcgttccaggcgcacaacgcggagcgcgtcgagcgcggcgaagac
gcgttcgcgaacccgcggaacgccgcggccggaacactccgccagttagacccgagcgtg
accgccgagcggccgctggactgcttcttctacgacgtgttggctgcgggcgagtcggaa
gctgacgccacggccgacgcctcgcgcggcggcctcgacggcggcttcgactcccactgg
gacgaacacgtcgcgctccccgagtgggggttgaaggtcgacgaccgctcggagcgcgtc
cccgacgtcgacggtgctatcgagtaccgcaatcgcctgggcgaggaacgggagtcactg
aactacgagatagacggcgtcgtgatcaaggtcgacgaccgcgcgcagtgcgccgaactc
gggacgaccgcacggcactaccggtgggcgttcgcctacaagttcccggcgcgcgcggag
gtgacgaccgtcgcggacgtcgtggtgcaggtcggccggacgggacggctcacgccggtg
gcgctgctcgaccccgtcgacgtcggcggcgtcaccgtctcccgcgcgagcctccacaac
cgcgacgaaatcgaagcgatgggtgtcggcatcggcgacgcggtgcgcgtccagcgcgcc
ggcgacgtcatcccgtacgtcgcggaggtggtcgaaccccacagcgaggaaaccatcgaa
ctccccgagacgtgtccacgctgcgggagtccggtcgagtacgagggtcccatcgcgttc
tgcacgggcgggctcgcgtgcccggcgcagctcgtccagggactcagctacttcgcggac
gtcctcgacgtcgagggcctgggcgagcgcgccgccgagcagttcgtcgaggatggggtc
gtcgagaacgacgtcgcggatatcttcgacgcgagcgtcgaggagatagccgccctggag
gggtggggagagacgagcgcgcggaacctccgcgacgaactggagggcgcacgtcaccca
ccactcgggcagttcctcgcggccatcggcatccgggaggttgggccgaccgtcgcccgg
gacgtggccgcggagttcgggacgctgggcgccgtcctcgctgccgacgaggatgatttt
cagtcagtgccgggcgtcggcagcgtagtcgccggccacctccgggagttcttcgacaac
gagcgcaaccgtagagtcgtcgagcgcctccgtgcggagacgcgtctcggtgagcccgag
ccggccgaacgcgaggtggccagcgaactcgacggcctgacgttcgtgttcacggggagc
gtcgacggctggacgcggggggaactccaggacctcgtgcagcgccacggcgggaacgcc
gtctcctcggtgtctgggaacaccgactacctcgtggtgggggagagtccggggcagacg
aagcgcgacgacgcggccgcagagggcgtcccggaactcgacgccgagtcgttcttcgac
gtcctcgcggagcgcggcgtcgacgcggagtaa
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