Hyphomicrobium denitrificans ATCC 51888: Hden_0238
Help
Entry
Hden_0238 CDS
T01265
Name
(GenBank) UDP-N-acetylmuramyl-tripeptide synthetase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn00300
Lysine biosynthesis
hdn00550
Peptidoglycan biosynthesis
hdn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Hden_0238
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Hden_0238
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hdn01011
]
Hden_0238
Enzymes [BR:
hdn01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Hden_0238
Peptidoglycan biosynthesis and degradation proteins [BR:
hdn01011
]
Precursor biosynthesis
Amino acid ligase
Hden_0238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LpxD
DUF6950
Motif
Other DBs
NCBI-ProteinID:
ADJ22063
UniProt:
D8JQR1
LinkDB
All DBs
Position
238684..240129
Genome browser
AA seq
481 aa
AA seq
DB search
MRLSDVLPAGIEPPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRGA
SAIVIGKGKGVTVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVADFT
RQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEASSH
GLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDGAR
SADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRSFDVRLPLVGAYQV
ENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIGERNGGLAVVDYAHKPEALAAAL
DACRPFVTGRLISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDNPRSEDAASIRAEIL
AGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKGHETGQIVGDRILPFSDHDEVRKALE
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttagcgatgtgctgccggccggcatcgagccgcctcctggcgcaggctccgtt
gaagtgacaggaataacggcggcaagcgcggcggtcggcaagggcgccattttcgcggcg
ctaccgggatcgaaggtcgacggcgcgtcgtatgttccggacgcgctccagcgcggcgcc
agcgccattgttatcggtaagggaaaaggcgtcacggttcctgccggcgttgcgctgatc
gaggtcgacaatccgcgcgcggcactcgcgaagattgccgcgaaatttgccggtcgccag
ccgcgctgcgcggtcgcggtgacgggaacgagcggcaagacttcagtcgccgattttacg
cggcagatctttacgtcgctcgggcgcaaggcggcgtcggtcgggacgattgggatcgtg
aagcctgatggggccgtctacggatcgctgacgacgcccgacccggtgacgctgcacacg
acgcttgcctcactcgccgatgaaggcgtgacgcatctcgcattcgaggcgtcgtcgcac
gggctcgatcagaaccgtctggatggcgttgaattgagcgcggctgcattcacgaatctc
ggccgcgatcacatggattatcatccgacggaagaagcttatctcgccgccaagctccgg
ctgttcatggaacttctgcaaccggggcaaccggccgtgatcaacacggacggggcgcga
tctgccgacgttgcggcggcagcgaaagcgcgcggtcttcgcgtcatgacggtcgggcag
tcgggcgatacgctgaaacggacttcactgacacgcgacgggtttcagcagcgcatcgga
attctgttcgatggccggagctttgacgtgcggttgccgctcgtcggcgcttatcaggtg
gagaatgcgctcgtcgcggcgggcctggcgattgcaacgggcgaaaaggctgatgcggtt
ctcgcagcactcgaaagtctcaagggcgtgccggggcgattggaaattatcggggaacgg
aatggcggtcttgccgtcgtcgattacgcgcataagccggaagcgttggccgcagcgctc
gatgcgtgccggccgttcgtgacgggccgtctgatttccgtcttcggctgcggcggcgat
cgcgacaagggtaaacggccgatcatgggtcgcatttcggtcgagaaagctgacgtgacg
attgtgacggatgataatccgcgcagcgaggacgccgcctcgatccgcgccgaaattctg
gccggggcggcgggggctcgcgagatcggcaaccgggcggaagcgatcgcgacggccgtc
agcatgatgcagccgggcgacgttgcgctgattgccggcaaaggccatgaaacgggccag
attgtcggagatcgcatcctgccattttcggatcacgatgaagtccgcaaggcgctcgag
agctga
DBGET
integrated database retrieval system
