Hyphomicrobium denitrificans ATCC 51888: Hden_0252 Help Entry Hden_0252         CDS       T01265                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism hdn  Hyphomicrobium denitrificans ATCC 51888 Pathway hdn03030   DNA replication hdn03410   Base excision repair hdn03420   Nucleotide excision repair hdn03430   Mismatch repair Brite KEGG Orthology (KO) [BR:hdn00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Hden_0252    03410 Base excision repair     Hden_0252    03420 Nucleotide excision repair     Hden_0252    03430 Mismatch repair     Hden_0252  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:hdn03032]     Hden_0252    03400 DNA repair and recombination proteins [BR:hdn03400]     Hden_0252 Enzymes [BR:hdn01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Hden_0252 DNA replication proteins [BR:hdn03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Hden_0252 DNA repair and recombination proteins [BR:hdn03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Hden_0252    NER (nucleotide excision repair)     GGR (global genome repair) factors      Hden_0252    MMR (mismatch excision repair)     DNA ligase      Hden_0252   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Hden_0252 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT 5_3_exonuc DUF7340 Motif Other DBs NCBI-ProteinID:  ADJ22077 UniProt:  D8JQS5 LinkDB All DBs Position 256309..258447 Genome browser AA seq 712 aa AA seqDB search MAKKTQKRSSGSVRPASPGATSVEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRR LTQLEDAHPELKRAGSPSEKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRF LNLGESDELEITAEPKIDGLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLL VGKDVPDVIDIRGEIYLGHKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRP LQFFAYAWGAASKLPSDTQRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKL DYDIDGVVYKVNRLDYQERLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPV AKLEPVTVGGVVVSNATLHNEDEISRKDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAA PYKFPAVCPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGL GGEKIEFFFETGRIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPL DRFLFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETV VDALIDFFSEQHNQEQLDALLKEVNVTAFKRVQVSSPVTGKTVVFTGTLTKLTRNEAKAQ AERLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGKA NT seq 2139 nt NT seq  +upstreamnt  +downstreamnt atggctaagaaaacgcaaaagcgctcttctggatcggtgcgtccggcttctccgggcgcg acaagcgttgaagacgaaatcgcccggctgtcggcggaaatcgaacgccacgatgagctc tactaccgtaacgatgcacccgaaatttcggatgccgactacgatgcgttgcgccgccgt ctcacccagctggaagacgctcatcccgagctgaagcgtgccggaagtccgagtgagaaa gtcggttccgcgccggtcgcggcgttcggcaagatcgcgcacgacgtgccgatgctgtcg ctcggcaatgccttcgacgatcaggacgtcgtcgatttcgtgcagcgcgttcgccgcttt ctaaatctcggcgagagcgatgagctcgaaatcacggccgagccgaagatcgacgggctt tcgatttcgatccgctacgaaggcggtcggctcgtgcaggctgcgacgcgcggagatggc gccgagggtgagaacgtcacggccaacgtcaagacgatcaaggacatcccgcaccttctc gtcggcaaggatgttccggacgtcatcgatatccgcggcgagatttatctcgggcacaag gattttgaaaagctcaacgcggcgcaggctgcgagtggcggcaaggttttcgccaacccg cgaaacgcggctgcgggatctttgcggcaattggattcgtcgatcacggcacagcggccg ttgcagttcttcgcgtatgcgtggggcgcggcttcgaagcttccgtcagatacgcagcgc ggcgtcgtcgcagcgttcaagtcttgggggctgccggtcaacccgctgatggagatcacg cgaagcccggatgagcttctcgattattatcgcgggatcgagagcaagcgcgccaagctc gactacgacatcgacggtgttgtctacaaggtcaaccgcctcgactatcaagagcggctc gggttcgtgtcgcgctcgccgcgctgggcgatcgcgcataaatttgcggccgaacgggcg acgacggttctgaacaagatcgatatccaagtcggccgcacgggtgcgctgacgccggtc gcgaaactggagccggtgaccgtcggcggcgtcgtcgtctcgaacgcgacgctgcataac gaagacgagatttcgcgcaaggacattcgcgaaggcgacacggtcgtcgtacagcgcgcc ggcgacgtcattccgcagatcgtcgaggtcgtgctcgacaagcggccgcagcacgccgcg ccttataaatttcctgcggtctgtccgatatgcggcagccacgcggtgcgcgagtccgat gaagagggaaacgcagcggacgtcgttcgccgctgcaccggcggcctcgtgtgcggcgcg cagctgaaagagcgcctgaagcatttcgtttcgcgcaacgctttcgacatcgaaggactt ggcggcgagaagatcgagtttttctttgagaccggacgcatcaaatcggcggctgacatt ttcacgctcgagaagcgcgatcaaaaatccgatgagccgctgacgaaggttcgcggcttc aaggagacctcggtcaacaagctgttcgcggccatcaacgcgcggcggaccgtgccgctc gaccgctttctgttcgcgctcggcatccgtcacatcggcgagacgacggcgaaggatctc gccaaggcatacgggacgttcgaagcgttgcgtgcagcggtcgatgccgccatccaaggc ggcaagggcagcgaagcctatcaggatatcgacaacatcgaaggcatcggtgagacggtc gtcgatgcgttgatcgactttttcagcgagcagcacaaccaggagcagctcgatgcgctg ctgaaggaagtgaacgtcacggcgttcaagcgcgtgcaggtctcgtcgccggtgacgggc aagacggtggttttcaccggcacgctgaccaaactgacgcgcaacgaggcgaaggcgcag gccgagcgtttgggcgcgaaggtgtcgggttccgtctcgaagaaaacagactacgtcgtt gctggcgcggaagccgggtcgaaactcgacaacgcgcgtgcgctcggcgtcatcgtcctc gacgaggacggatggcttgagctgatcgggaaagcctaa

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