Halococcus dombrowskii: MUK72_02265
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Entry
MUK72_02265 CDS
T08074
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hdo
Halococcus dombrowskii
Pathway
hdo03030
DNA replication
hdo03410
Base excision repair
hdo03420
Nucleotide excision repair
hdo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUK72_02265 (ligA)
03410 Base excision repair
MUK72_02265 (ligA)
03420 Nucleotide excision repair
MUK72_02265 (ligA)
03430 Mismatch repair
MUK72_02265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdo03032
]
MUK72_02265 (ligA)
03400 DNA repair and recombination proteins [BR:
hdo03400
]
MUK72_02265 (ligA)
Enzymes [BR:
hdo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUK72_02265 (ligA)
DNA replication proteins [BR:
hdo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUK72_02265 (ligA)
DNA repair and recombination proteins [BR:
hdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUK72_02265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUK72_02265 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUK72_02265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUK72_02265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
RNA_pol_A_CTD
5_3_exonuc
DNA_ligase_ZBD
HHH_8
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UOO95545
LinkDB
All DBs
Position
complement(426541..428658)
Genome browser
AA seq
705 aa
AA seq
DB search
MTASDAADADNPYLRDPPTEFDDLATLDEEQAREQAEQLREAIRRHDHRYYIEADPGIPD
RTYDALFSRLESLENSFDIASETSPTRRIGGEPLDELATVDHVAPMLSIDSSGDPEEVRE
FDERVRRELGETGGQQSLAEFESGNDGIEYVCEPKFDGLSIEVVYEDGVYERAATRGDGR
EGDDVTQNVRTIGSVPQRLRGEYPDYLAVRGEVYMPRDAFAEHNRERVERGDDPFANPRN
AAAGTLRQLDPAVTAERPLACFFFGVLETSHNFDEHSEQHEKLREWGLSVNDRVEVASNI
EGAIDYRDRLGEAREELNYEIDGTVFKVNDLVACERLGTTARAPRWAYAYKFPARSEITR
ITDITVQIGRTGRATPVALLDPVEVGGVEVSRATLHNPGEIEELGVNIGDRVRLQRAGDV
IPYVVEVVEDGGEGTFEFPDRCPICDSAIERDGPLAFCTGGVACPAQLQRALEHYASREG
LDIEGLGEERIDQLLDAELVESIPDLYDLREADLARLDGWGEKSASNLREELDAATEPPL
PEFLTALGVPEVGSTTAESLAREFGTLDTLMDASEDELREVPDIGPRVASEIREFFDSER
NQETVAGLRERGVEPESVEHERGDALAGETFVFTGGLSELTREEAESLVEQHGASSTGSV
SGNTDYLVVGENPGRTKRDDAEREEVPELTEEEFVALLDEHGIEF
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctcggacgccgcggacgcggacaacccctatctccgcgatccgccgacggag
ttcgacgacctcgcaacgctcgacgaggagcaggcgcgcgagcaggccgagcagctgcgc
gaggcgatccgccgacacgaccatcggtactacatcgaggccgacccggggattccggat
cggacctacgacgcgctcttctcccggctcgaatcgctcgaaaactccttcgacatcgcg
agcgaaacgagcccgacccggcgcatcggcggggagccgctcgacgaactcgcgaccgtg
gaccacgtcgcgccgatgctctcgatcgactccagcggcgatcccgaggaggtccgggag
ttcgacgagcgcgtgcgtcgcgaactcggggaaactggcggccagcaatcgctcgcggag
ttcgagagtgggaatgacgggatcgagtacgtttgcgagccgaagttcgacgggctctcg
atcgaggtcgtctacgaggacggggtttacgagcgcgccgcgacccgcggagacggtcgc
gagggtgacgacgtgacacagaacgtccggaccatcgggtcggttccacagcgtctccga
ggagagtatcccgactacctggccgtgcgcggcgaggtctacatgccgcgcgacgccttc
gccgaacacaaccgcgagcgcgtcgaacgcggcgacgacccgttcgcgaaccccagaaac
gcggccgcaggcacactccgccagctcgaccccgccgtcaccgccgagcgcccgcttgcc
tgcttcttcttcggcgtgctcgaaaccagccacaatttcgacgaacacagcgaacagcac
gaaaagctgcgtgagtggggcctatcagtcaatgatcgtgttgaggttgcttcaaatatc
gagggcgctatcgactaccgcgatcgcctcggcgaggcgcgcgaggagctgaactacgag
atcgacgggacggtgttcaaggtgaacgatctcgtggcctgcgagcggctcggaacgacc
gcgcgcgccccgcgctgggcctacgcctacaagttccccgcacggagcgagatcacgcga
atcaccgatattaccgtacagatcggtcgaacgggacgagcgacgccggtcgcattgctc
gatcccgtcgaggtcggcggcgtcgaggtctcgcgggcgacgctgcacaaccccggcgag
atcgaggagctcggcgtgaatatcggcgatcgggtgcgtctccagcgcgcgggcgacgtg
atcccctacgtcgtcgaggtcgtcgaggacggcggcgagggtaccttcgaattccccgat
cgctgtccgatctgtgacagcgcgatcgagcgcgacggcccgctcgcgttctgtacgggc
ggggtcgcctgccccgcacagctccagcgcgcgctggaacactacgccagccgcgaagga
cttgacatcgagggactaggtgaggagcgcatcgatcagctgctcgatgctgaactggtc
gaatcgatccccgatctctacgatctccgagaggcggatctcgcccgtctggacgggtgg
ggtgagaagagcgcgtcaaatcttcgagaggagctcgatgcggcgacggaacccccgctc
ccggagttcctcaccgcgctcggcgtccccgaggtgggatcgacgaccgccgagagcctc
gcccgtgagttcggaacgctggatacgttgatggacgcgagcgaggacgagctccgcgag
gtgccggacatcggcccgcgcgtcgcgagcgagatccgggagttcttcgacagcgaacgg
aaccaagagacggtcgccggcctgcgcgagcgcggcgtcgagcccgaatcggtcgagcac
gagcgtggcgacgccctcgccggcgagacgttcgtgttcacgggcgggctatcggagctg
actcgtgaggaggccgaaagcctcgtcgaacagcacggggcgagtagcacaggaagcgtc
tcgggcaacaccgactacctggtggtcggcgagaaccctggacggacgaagcgcgacgac
gccgagcgagaagaggtgcccgaactcactgaagaggagttcgtggcgctgctcgacgaa
cacgggatcgaattctga
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