Halapricum desulfuricans: HSR122_1767
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Entry
HSR122_1767 CDS
T07709
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hds
Halapricum desulfuricans
Pathway
hds03030
DNA replication
hds03410
Base excision repair
hds03420
Nucleotide excision repair
hds03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HSR122_1767 (lig)
03410 Base excision repair
HSR122_1767 (lig)
03420 Nucleotide excision repair
HSR122_1767 (lig)
03430 Mismatch repair
HSR122_1767 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hds03032
]
HSR122_1767 (lig)
03400 DNA repair and recombination proteins [BR:
hds03400
]
HSR122_1767 (lig)
Enzymes [BR:
hds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HSR122_1767 (lig)
DNA replication proteins [BR:
hds03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HSR122_1767 (lig)
DNA repair and recombination proteins [BR:
hds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HSR122_1767 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HSR122_1767 (lig)
MMR (mismatch excision repair)
DNA ligase
HSR122_1767 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HSR122_1767 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
RUBY_RBDX
BRCT_2
PTCB-BRCT
DZR_2
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QSG09153
UniProt:
A0A897NDQ3
LinkDB
All DBs
Position
1633672..1635759
Genome browser
AA seq
695 aa
AA seq
DB search
MPDAEPPDNPYVEDPPTDFEPVEDLDPERAREQAEQLREAIRYHDYRYYAANDPVVGDRT
YDALFVRLRDLEDAFDLDHEDSPTQRVGGEPLDELATVEHVAPMRSIEQSGDPEDVYAFD
ERVRRELEEAGYEGSVGYHCEPKFDGLSVEVVYENGVYRRAATRGDGVEGDDVTENVRTI
GAVPERLRGGYPDYLAVRGEVYMPRAAFNEYNRERVERGDEPFANPRNAAAGTLRQLDPS
VTAERPLSIFFFGVLDASTRFDSQSELYERFPEWGLRVSDRVELVEGIEAAIEYRDRMLK
ARDDLDYEIDGTVIKVDDRAACELLGSTSRSPRWAFAYKFPARKETTRVRDIVVQVGRTG
RLTPVALLDPVEVGGVTVSRATLHNPAEIDRLGVDVSDEVRVQRAGDVIPQVVEVTDKRA
EGTFEFPDRCPVCGAPVERDGPMAFCPGGFTCDAQLERAIVHYASRDGLDIEGLGESGVE
QLLETGLLESLPDLYELDADSLADLDGWGKTSADNLLGELEASREPPLADFLAGLSIPDV
GSTTAATLAREFGTFEAFREVAEAGDTERLQAVEDIGPEVADSIVTFFGRDRTQKTLDRL
LDHVSPQEADTSGGDELDGLTFVFTGTLTAYTRSEAQELVEAHGGNATSSVSANTDYLVV
GDSPGQRKLEDADAEGVPIIDESEFEELLEERDVL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgccgagccgccggacaacccctacgtcgaggatccgccgactgacttcgag
ccagtcgaagacctcgatcccgaacgcgcccgcgagcaggccgaacagctacgcgaggcc
atccgctatcacgactaccgttactacgccgcaaacgaccccgtcgtcggcgatcggacc
tacgacgcgctcttcgttcgcctgcgcgatctcgaagacgccttcgacctcgatcacgag
gacagtccgacacagcgcgtcggcggcgagcccctcgacgaactggcgaccgtcgaacac
gtcgcgccgatgcgctcgatcgaacagagcggcgatccggaggacgtatacgcgttcgac
gagcgcgttcgccgcgaactggaggaggcgggctacgaggggtcggtcgggtatcactgc
gagcccaagttcgacgggctctcggtcgaggtcgtctacgaaaacggcgtctaccggcgg
gcggcgacccggggagacggcgtcgagggcgacgacgtcacggagaacgtccggacgatc
ggggccgttcccgaacgcctccgcgggggctatcccgactacctggccgtgcgaggcgag
gtctacatgccgcgggccgcgttcaacgagtacaaccgcgagcgcgtcgaacgcggcgac
gagccgttcgccaaccccagaaacgccgccgcggggacgcttagacagctcgatccctcg
gtcaccgccgagcgcccgctgtcgatcttctttttcggcgtgctggacgcgagcacccgg
ttcgactcccagtcggagctgtacgagcgattccccgagtggggccttcgcgtctctgat
cgggtcgaactcgtcgagggcatcgaggcagcgatcgagtaccgcgatcggatgctcaag
gcccgggacgacctcgattacgagatcgacggcaccgtcatcaaggtcgacgaccgcgcg
gcctgcgagctgctggggtcgacctcgcgatcgccgcggtgggccttcgcctacaagttc
ccggcccgcaaggagacaacccgggtccgcgatatcgtcgtgcaggtcggccgcaccgga
cggttgactcccgtcgcgctgctcgatccggtcgaggtcggcggcgtcaccgtctcgcgg
gcgacgctgcacaaccccgcggagatcgaccgtctcggcgtcgacgtcagcgacgaggtc
cgggtccagcgggccggcgacgtcatcccgcaggtcgtcgaagtgaccgacaagcgggcc
gaggggaccttcgaattccccgatcggtgtccggtctgtggggcacccgtcgagcgcgac
gggccgatggcgttctgtccgggcgggttcacctgcgacgcacagctcgaacgagcgatc
gtccactacgcctcccgcgacgggctggacatcgagggactgggcgagtccggcgtcgaa
cagttgctcgaaaccggcctcctcgagtcgcttccggacctctacgaactggacgccgat
tcgctcgcggacctcgacggctgggggaaaacgagcgcggacaacctcctcggggaactg
gaggccagccgcgaaccgccgctcgcggatttcctcgcggggctgtcgattcccgacgtc
ggatcgacgacggctgcgacgctggcccgcgagttcggcaccttcgaggcgttccgggag
gtcgccgaggccggcgatacggaacgcctgcaggcggtcgaagacatcggccccgaggtc
gcggacagtatcgtcacgttcttcgggcgcgatcgaacgcagaagacgctagatcgactg
ctcgatcacgtctcgccacaggaggccgatacttccggcggcgacgaactcgacgggctg
acgttcgtgttcaccgggacgctcacggcgtacacacgcagcgaggcacaggaactcgtc
gaagcccacggcgggaacgccacgagcagcgtctcggccaacaccgactacctcgtcgtc
ggtgacagccccgggcagcgaaagctcgaggacgccgacgccgaaggagtaccgattatc
gacgaaagcgagttcgaggaactgctcgaagagcgcgacgtgttataa
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