Herbiconiux sp. SALV-R1: HL652_04070
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Entry
HL652_04070 CDS
T06594
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03030
DNA replication
hea03410
Base excision repair
hea03420
Nucleotide excision repair
hea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HL652_04070 (ligA)
03410 Base excision repair
HL652_04070 (ligA)
03420 Nucleotide excision repair
HL652_04070 (ligA)
03430 Mismatch repair
HL652_04070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hea03032
]
HL652_04070 (ligA)
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_04070 (ligA)
Enzymes [BR:
hea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HL652_04070 (ligA)
DNA replication proteins [BR:
hea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HL652_04070 (ligA)
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HL652_04070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HL652_04070 (ligA)
MMR (mismatch excision repair)
DNA ligase
HL652_04070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HL652_04070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
RNA_lig_T4_1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QJU52889
UniProt:
A0A6M5J0A2
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All DBs
Position
838930..841326
Genome browser
AA seq
798 aa
AA seq
DB search
MARGGRGAGAAGVGAASGEALPSETPSDLEAAKAEAEQLTSRILELRDEYYENNASTVSD
QEYDLMVRRLDELERAHPELQSHDSPTQTVGGRAVTTMFTPVTHAERMLSLDNVFSEEEL
DEWAAKVVRDSGSSTVRFLSELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTDNVLKI
ASIPSRLAGSGHPPLVEVRGEIFFPVAAFDDLNAAQEAAGERVFANPRNAAAGSLRQKSE
GKNEKQLALVNARLSALRMLVHGIGAWPNPPVSAQSEVYGLLAEWGLPTSTHFKVFDTVA
EVAEFIRYYGAHRASVEHQIDGIVVKVDDLALHDELGATSRAPRWATAFKYPPEEVNTKL
LDIVVSVGRTGRATPFAVMEKVEVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVI
PEVLGPVVELRDGSEYPFVMPENCPSCGTKLAPAKEGDVDLRCPNARSCPAQVRGRVEHV
GSRGAMDIEVLGEVSAAALTQPLEPEVPPLVTEAGLFSLTMEDLFPIRVVVRDSETGLEK
LDKDGSSPKVVAPFRRKRQKSDPPYDPEAMGADFAGDEEFVPSSNAIKLLDEIEKAKTKP
LWRMLVSLSIRHVGPVAARALADYFGSLDAIRAASRDELAAVDGVGGIIADALIAWFEVD
WHVEIIERWAAAGVQFTTPGHPGPGAAVGAGGVLEGVTVVATGSLEGFTREGALEAIIQA
GGKAASSVSKKTDFVAAGPGAGSKLTKAEALGLRIIDAAEFALLVTQGPSALAPTTEVET
VEDIEGDAPEAAAGDPAS
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggggtgggcgcggggcgggcgccgcgggcgtaggcgcggcttcgggcgaggcg
ctgccgagcgagacgcccagcgatctcgaggcggcgaaggccgaggccgagcagctcacc
tcgcgcatcctcgagctgcgcgacgagtactacgagaacaacgcctccacggtctccgac
caggagtacgacctcatggtgcggcgcctcgacgagctcgagcgagcgcatccggagctg
cagtcgcacgacagccccacccagaccgtgggcggccgggccgtcaccaccatgttcacg
cccgtcacgcacgccgaacgcatgctgagtctcgacaacgtgttcagcgaggaggagctc
gacgagtgggccgcgaaggtcgtgcgcgactccgggtcgtcgacggtgcgcttcctcagc
gagttgaagatcgacgggctcgccatcaacctgcggtacgagaacggcgtgctcgtcacc
gccgccacccgcggcgacggtgtggtgggcgaagacgtcaccgacaacgtgctgaaaatc
gcctccatcccgtcgaggctcgcggggtcggggcatccgccgctggtcgaggtgcgcggc
gagatcttcttcccggtcgccgccttcgacgacctcaacgccgctcaggaggctgcgggc
gagcgtgtgttcgcgaacccgcgcaacgccgcggcgggctcgctgcggcagaagagcgag
ggcaagaacgagaagcagctcgccctcgtgaacgcccgcctctcggcgctgcggatgctc
gtgcacggcatcggggcgtggccgaacccgcccgtgtcggcgcagtcggaggtgtacggg
ctgctcgcggagtgggggctgcccacctcgacccacttcaaggtgttcgacacggtcgca
gaggtggccgagttcatccgctactacggtgctcatcgggcgtcggtggagcaccagatc
gacggcatcgtggtgaaggtcgacgacctcgcgctgcacgacgagctcggggccaccagc
cgtgctccgcgctgggcgaccgccttcaagtacccgcccgaagaggtcaacacgaaactg
ctcgacatcgtggtgagcgtggggcgcaccgggcgcgccacaccgttcgcggtgatggag
aaggtggaggtcgccgggtcggaggtgcggcaggccacgctgcacaaccaagacgtggtg
aaggcgaagggcgtgctcatcggcgacacggtcgtgctgcgcaaggcgggcgacgtgatt
cccgaggtgctcggcccggtggtggagctccgcgacggcagcgagtaccccttcgtgatg
cccgagaactgcccgtcgtgcggcacgaagctcgcgccggcgaaggagggcgacgtcgat
ctgcgctgtcccaacgcgcgcagctgcccggcccaggtgcgcgggcgcgtcgagcacgtc
ggctcgcggggtgcgatggacatcgaggtgctcggcgaggtgagcgccgccgccctcacg
cagccgctcgagcccgaggtgccgccgctcgtcaccgaggcgggtctgttctcgctcact
atggaagacctgttccccatccgtgtcgtggtgcgcgactccgagaccgggctcgagaag
ctcgacaaagacgggtcgtcgccgaaggtcgtcgcgccgttccgtcgtaagcggcagaag
tccgacccgccgtacgaccccgaggccatgggggccgacttcgcgggcgacgaggagttc
gtgccgtcgtcgaacgcgatcaagctgctcgacgagatcgagaaggcgaagacgaagccg
ctgtggcgcatgctcgtgtcgctcagcatcaggcacgtggggccggtcgccgcccgtgcg
ctcgccgactacttcggctcgctggacgccatccgcgccgcgagccgcgacgagctcgcc
gccgtcgacggcgtcggcggcatcatcgccgacgccctcatcgcctggttcgaggtcgac
tggcacgtcgagatcatcgagcggtgggccgcggcgggtgtgcagttcacgaccccgggt
cacccgggccccggcgcagcggtaggtgcgggcggcgtgctcgagggtgtcaccgtggtg
gccaccggctcgctcgagggcttcacccgcgagggcgcgctcgaagcgatcatccaggcg
ggcggcaaggcggcctcgagcgtcagcaagaagaccgacttcgtggccgccggccccggg
gccggctcgaagctcacaaaagccgaggcgctcggcctccgcatcatcgacgccgccgag
ttcgcgctcctcgtcacccaaggcccctcggccctggcccccaccaccgaggtggagacc
gtcgaggacatcgagggcgacgcccccgaggccgccgccggcgaccccgcctcctga
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