Candidatus Hydrogenosomobacter endosymbioticus: HYD_3570
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Entry
HYD_3570 CDS
T07863
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hec
Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03030
DNA replication
hec03410
Base excision repair
hec03420
Nucleotide excision repair
hec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYD_3570 (ligA)
03410 Base excision repair
HYD_3570 (ligA)
03420 Nucleotide excision repair
HYD_3570 (ligA)
03430 Mismatch repair
HYD_3570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hec03032
]
HYD_3570 (ligA)
03400 DNA repair and recombination proteins [BR:
hec03400
]
HYD_3570 (ligA)
Enzymes [BR:
hec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYD_3570 (ligA)
DNA replication proteins [BR:
hec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYD_3570 (ligA)
DNA repair and recombination proteins [BR:
hec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYD_3570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYD_3570 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYD_3570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYD_3570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BDB96224
UniProt:
A0ABM7V9N3
LinkDB
All DBs
Position
412291..414426
Genome browser
AA seq
711 aa
AA seq
DB search
MVCEVSYITKLMNDRDTKTKRALDAEEKAEQEIRYLSDQISEHDVLYYQFDSPSISDEEY
DLLRARLRDLEMRFPKLKSQDSPSQRVGHLASDSAFKKIKHLKPVFSLDNAFSDEQASAF
IEKSARFLNLEKNTPIEWIADPKIDGLAMVLRYVNGELISAATRGNGEEGEDVTKNAKTI
CDIPNSLINYDGPSEIEIRGEVYIMEADFQKMNADRKKEDLVPFANSRNCASGSLRQLDD
TITASRPLRFLGYGFTDIGEKSYEDGMKRLASWGIPVQLSLRCRSVDDVIKSFRYFSSLR
EKNRIGYAIDGVVYKINNLEWQKRLGSSARAPRFAFAYKFRSEEQITTIEDISVQVGRTG
VITPVAHVDPVLVGGVVVRRASLHNEDEISRKDVRIGDKVVLRRAGDVIPKIESVIESMR
NSSSKPFNFPNLCPSCGSELFREPSKSAVKCINSFACPAQSIWKIRHFTSKQAFNIAGMG
EQTIKTFINFGLIRLVDDIFDLHQKRNQIEQLDGFGKKATTNLLTAIENSREISLDRFIF
SLGIPEIGESASKELAKHYLSIDNLVSAACALSSSYDPAITPFSDLTNIDGIGSSTATQL
RDFFSFRDNECLVRSLISKVKVAPFSHEKIKNSSQFFGKTIVFTGRLETMSRSEAKSIAE
KLGAKVMNSVSSKTDFLIVGKGGGSKLEEAEYMGVQCVSESEWARQSSMLI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggtctgcgaagtgtcttatataacaaagctgatgaacgaccgtgatacaaaaaccaaa
agggctttagacgcggaagagaaagccgagcaggagattcgatatctgtctgatcaaatc
tctgaacatgatgtattgtattatcaattcgactctccaagcatctctgatgaggaatat
gacctgctaagagctaggcttcgtgacttggaaatgaggtttccaaaattaaaatcacaa
gatagcccttctcaacgtgttggtcacctagcatccgactctgctttcaaaaaaataaag
caccttaagccggttttttctctagataacgcgttttctgatgagcaagcctcggctttc
atagaaaaatctgccagatttcttaatttggaaaaaaacacacccatagaatggatagca
gaccctaaaatagatgggttagctatggtattgcgttatgtgaatggcgagcttataagt
gccgccacccgcggaaacggagaggaaggagaagacgttacaaaaaacgcgaaaaccata
tgcgatataccaaattctctcataaactatgacggacctagtgagatagaaatcaggggc
gaagtttacataatggaagcagatttccaaaaaatgaacgcggacagaaaaaaagaagac
cttgttccgtttgcaaactctagaaattgcgcctctggctctcttcgtcagctagatgat
accataaccgcttctcgccctctcagatttcttggatatgggttcacagatataggagaa
aagtcatacgaggatgggatgaaaagactagcttcttggggaatacctgttcaattatcg
ctaagatgtcgttctgttgatgatgttataaaatcttttagatacttttccagtttgcgg
gagaaaaaccgtattggttacgcgatagacggggttgtatataaaataaataatctcgag
tggcaaaaaaggctcggctcatcggcaagagctcctcggttcgctttcgcatataagttc
aggtctgaggagcagataacaacaatagaggatatatcggttcaagttggacgcaccgga
gttatcactcctgttgcccacgtggaccctgtactggttggaggggtggtcgtacgaaga
gcatctctccataacgaggatgagatctcgagaaaagacgtaagaatcggagataaagtc
gtgctgagacgcgcaggcgacgtaattcctaaaatagagtctgtaatcgaaagcatgcgc
aacagttcttcgaaaccattcaattttccaaacctatgtccatcgtgcggatcggagctc
ttcagagaaccaagtaaatcagctgtaaaatgcataaatagcttcgcttgccccgcccaa
tccatctggaaaatacgccactttacttcaaaacaagcattcaatatcgcagggatgggg
gagcaaacaataaaaacttttattaattttgggctaataagactcgtagacgatatattt
gatctacatcaaaaacgtaaccaaatagaacaactagatggatttggcaagaaagcaaca
acaaatttattaaccgccatagaaaatagcagagaaatttctcttgaccggttcatattt
tctctcggaataccagaaattggagagtcggcatctaaagaacttgcgaaacattatctg
tcaatcgacaacttggtaagtgccgcatgcgctctttcatcttcatatgatccagcaata
actccattttctgatcttactaatattgatggtataggatcgtctacagcaacacagcta
cgtgatttcttttcattcagagataacgagtgtttggtgcgctctctgatcagcaaagta
aaagttgctccgtttagtcatgaaaaaataaaaaattcttcacagttttttggaaaaacc
atagtattcactggaaggcttgaaaccatgagcaggagcgaggcaaaatccatagctgaa
aaacttggcgccaaggtgatgaactctgtttcatcaaaaacagactttcttatagttggc
aaaggaggtggctctaaacttgaagaagcagaatatatgggggtgcagtgcgtttctgaa
agcgagtgggccagacaaagctctatgcttatttag
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