Herbiconiux sp. L3-i23: L3i23_21710
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Entry
L3i23_21710 CDS
T08550
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
heh
Herbiconiux sp. L3-i23
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
heh03009
]
L3i23_21710 (rlmC)
Enzymes [BR:
heh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
L3i23_21710 (rlmC)
Ribosome biogenesis [BR:
heh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L3i23_21710 (rlmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
MTS
Methyltransf_11
Methyltransf_15
Methyltransf_12
Methyltransf_4
Methyltransf_23
Cons_hypoth95
TehB
TPMT
Motif
Other DBs
NCBI-ProteinID:
BDI23395
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All DBs
Position
2280444..2281565
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AA seq
373 aa
AA seq
DB search
MQCSYYDAGLCRSCTLLEQPYPDQLADKDARSRSLLDDPTIAWLPPVASAPSGYRNKAKM
VVGGTVDAPTLGILDGRGRGVDLRGCALCTPGIQAAMPALAAFVTLAGLAPYDVPARSGE
LKYVLVTEAPNGELMLRFVLRSEASIPVIRANLDALHRALPRVAVVTANLLPEHKAVVEG
DREVVLTTRDTLTMTLGGIDLHLRPQSFFQTNTDIAERLYAQAREWADEIGPRSVWDLYC
GVGGFALHLAAPGRSVIGVEASVEAIESARRSAGDLGLTEVRFESGDATRFAMSAGDAPD
LVVVNPPRRGIGAELAGHFERSGPRHIVYSSCNPVSLAKDLAMMPSYAVRRARVLDMFPQ
TLHLEVITLLERR
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgctcgtactacgacgccggcctctgccggtcctgcaccctcctcgagcagccg
taccccgaccagctcgccgacaaggacgcccgctcccgttcgctgctcgacgatccgacg
atcgcctggctgccgcccgtggcgagcgccccgtccggctaccgcaacaaggcgaagatg
gtggtgggcggcacggtcgatgccccgaccctcggcatcctcgatggccgtggccgcgga
gtcgacctcagaggatgcgcgctctgcacccccggcatccaggcggcgatgcccgcgctc
gctgccttcgtcaccctggcgggcctcgccccctacgacgtgccggcacggtcgggcgaa
ctcaagtacgtgctcgtcaccgaggccccgaacggcgagctgatgctgcgcttcgtgctg
cgctcggaagcgtcgatccccgtgatccgggcgaacctcgacgccctccaccgggcgctg
ccccgggtcgccgtcgtgaccgccaacctcctccccgagcacaaggccgtcgtcgaaggc
gaccgcgaggtcgtactcaccacgcgcgacaccctcaccatgacgctcggcggcatcgac
ctgcaccttcggccgcagagcttcttccagaccaacaccgacatcgccgagcggctctac
gcccaggcccgcgagtgggcggacgagatcggcccgcggtcggtgtgggacctgtactgc
ggcgtcggcgggttcgcgttgcatctcgccgcgcccggacgcagtgtcatcggagtcgag
gcgagcgtcgaggcgatcgagagcgctcgccgcagtgccggcgacctcgggctgacggag
gtgcgcttcgaatccggcgacgccacccgtttcgcgatgagcgcgggcgacgcacccgac
ctcgtcgtcgtaaacccaccccgccgcggcatcggcgccgaactcgccggacacttcgaa
cgctccgggccacggcacatcgtctactcgagctgcaaccccgtgagcctcgcgaaggac
ctcgcgatgatgccctcctacgccgtgcgtcgcgcccgcgtgctcgacatgttcccgcag
accttgcacctcgaagtgatcacgctgctcgaacggcgttag
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