Halomonas elongata: HELO_3719
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Entry
HELO_3719 CDS
T01311
Symbol
ligA
Name
(GenBank) DNA ligase (NAD) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hel
Halomonas elongata
Pathway
hel03030
DNA replication
hel03410
Base excision repair
hel03420
Nucleotide excision repair
hel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HELO_3719 (ligA)
03410 Base excision repair
HELO_3719 (ligA)
03420 Nucleotide excision repair
HELO_3719 (ligA)
03430 Mismatch repair
HELO_3719 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hel03032
]
HELO_3719 (ligA)
03400 DNA repair and recombination proteins [BR:
hel03400
]
HELO_3719 (ligA)
Enzymes [BR:
hel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HELO_3719 (ligA)
DNA replication proteins [BR:
hel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HELO_3719 (ligA)
DNA repair and recombination proteins [BR:
hel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HELO_3719 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HELO_3719 (ligA)
MMR (mismatch excision repair)
DNA ligase
HELO_3719 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HELO_3719 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CBV43603
UniProt:
E1V8E7
LinkDB
All DBs
Position
complement(3189095..3191143)
Genome browser
AA seq
682 aa
AA seq
DB search
MTQPDPTIQDEAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPELVRPD
SPTQRVGAAPADGFPEIEHAVPMLSLDNAFDEDELAAFVKRVADRLEIDGESIAFCCEPK
LDGAAVSLVYERGELTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDVLEVRGEVT
MRHADFEAMNDKAREEGGKVFANPRNAAAGSLRQLDPRITDQRPLEFSAYQAARIEPDAG
DASHSALMARLSEFGFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGVVIKVDDLR
LQRELGFVARAPRWAIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSN
ATLHNADEIARLGVMIGDTVAIRRAGDVIPQVVRVQEEDRPDDAREIVFPERCPVCDSQI
ERLEDEAVARCSGGLYCAAQRKEALKHFASRRALDIEGLGEKLIDQLVELDWVQTPADLF
ALEAERLATLPRMGEKSSQNLVTALEKAKATTLPRFIFALGIREVGEATAANLARHFGTL
EALMDAERDALEQVDDVGPIVAAHVHTFFRQPHNRDTIAALRQAGVHWEEAEVEIGPTLL
EGQSWVLTGTMESMTRDEGKARLQALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVE
VIDEATFLERLEAWEKGDAQDG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcccgatcccacgattcaggacgaggcggcgcgcctgcgtgccgaactcgat
gatgccaatcatcgttactatgtgctcgacgaaccccgcatgaccgacgccgactatgac
cgcaagttgcggcgtctgcaggaaatcgagaccgaatatcccgaactcgtcaggcccgat
tcgcccacccagcgggtcggtgccgcacctgccgacgggtttccggagatcgagcacgct
gtgccgatgctgtcactggacaatgccttcgacgaggacgagctggccgccttcgtcaag
cgtgttgccgatcgcctcgaaatcgatggcgagtcgattgccttctgttgtgaacccaag
ctggacggcgcggcggtgtccctggtctacgaacggggcgagctgaccgccggcgtgacc
cgtggcgacggccgtactggcgaagggatcacttcgaatctcaggacgctgaagtcgatc
ccgctgaagctgcgtggccggcactggccggacgtactggaagtgcgcggcgaggtgacc
atgcgccatgccgatttcgaggccatgaacgacaaggcccgggaagagggcggcaaggtg
ttcgccaacccgcgcaatgccgccgccggcagcctgcgtcagctcgatccgcgtatcacc
gaccagcgcccgctggaattcagcgcttatcaggcggcgcgcatcgagccggatgccggc
gatgccagccacagtgccctgatggcgcgcctgagtgaattcgggtttcgcaccagcgct
gagcttcgggtcgtgcgcggaaccgagggcgtgatcgaatactgccgggcgctcggcgag
aagcgcgatgccctgggctatgacatcgacggcgtggtgatcaaggtcgacgacctgcgc
ctgcagcgtgaactgggcttcgtggcccgggcaccgcgctgggccatcgccttcaagttt
cctgcccaggagcaggtgacgcgcctcaacgacgtggaattccaggtcggtcgcaccggt
gccatcacgccggtggcacggctcgagccggtctcggtggccggggtcacggtctccaac
gccaccctgcacaatgccgacgagattgcccggctaggcgtcatgatcggcgatacggtg
gcgatccggcgtgccggcgatgtgattccccaggtggtgcgtgtacaggaggaggatcga
cccgacgacgcccgggagatcgtctttcccgagcgttgcccggtctgcgactcccagatc
gagcgactcgaggacgaggccgtggcgcgctgttccggcggcctgtactgtgccgcgcag
cgcaaggaagccctcaagcacttcgccagtcggcgtgccctggacatcgaggggctgggc
gaaaagctgatcgaccagctcgtcgaactcgactgggtacagacaccggccgacctgttc
gccctcgaggcggagcgtctcgccaccctgccgcgcatgggcgaaaaatcctcgcagaac
ctggtgacggccctggagaaggccaaggcgacgaccttgccacgcttcatcttcgcgctg
ggaatccgcgaagtgggcgaagccaccgccgccaatctggcgcgccacttcggcaccctg
gaagcgctgatggatgccgagcgcgatgccctggagcaggtggacgatgttggtcccatc
gtggccgcccatgtgcataccttcttccgccagccgcacaaccgcgacaccatcgcggca
ctgcgccaggccggcgtgcactgggaagaagccgaggtcgagatcggcccgaccctgctc
gaagggcagagctgggtgctgaccggcaccatggagagcatgacccgggacgaaggcaag
gctcgcctccaggcgctgggcgccaaggtggccggcagcgtgtcgaagaagaccgcctgc
ctggtggccggtgaggccgccggcagcaagctgaccaaggccgaacaactcggcgtggaa
gtcatcgacgaagcgaccttccttgaacgcctggaagcctgggagaaaggagacgcacag
gatgggtga
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