Helicobacter pylori UM298: K748_00280
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Entry
K748_00280 CDS
T02757
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hem
Helicobacter pylori UM298
Pathway
hem03030
DNA replication
hem03410
Base excision repair
hem03420
Nucleotide excision repair
hem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K748_00280
03410 Base excision repair
K748_00280
03420 Nucleotide excision repair
K748_00280
03430 Mismatch repair
K748_00280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hem03032
]
K748_00280
03400 DNA repair and recombination proteins [BR:
hem03400
]
K748_00280
Enzymes [BR:
hem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K748_00280
DNA replication proteins [BR:
hem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K748_00280
DNA repair and recombination proteins [BR:
hem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K748_00280
NER (nucleotide excision repair)
GGR (global genome repair) factors
K748_00280
MMR (mismatch excision repair)
DNA ligase
K748_00280
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K748_00280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
Nlig-Ia
HHH_2
PTCB-BRCT
RNA_ligase
HHH_5
RabGAP-TBC
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AGR62001
LinkDB
All DBs
Position
complement(1396973..1398943)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPNNIQANSPTQ
KVGATTPNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVSATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFSNPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNTNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDMAKEKQENSSVFSHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagagtatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgaacctatcgtaagcgatgcagtctatgatgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaataacattcaagccaattcccctacccaa
aaagtgggggctactacccccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttggatgatgtgttcaatcaaagcgaattgcaagcatggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttatatcaacatggcaagctagtgagcgcaaccactaggggaaacggcttagaaggggaa
ttagtgagtgcaaacgctaaacacatcgctaatatcccccatgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattttctaaccctagaaatgccgcatcagggagt
ttgagacagcttgatagcaaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctaggttttagcgctattcaatacttaagcctaaatacaaaccaccaagaaatagaagaa
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgtgcttataaattcccggctctagaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgcagtggggcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgttgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaacctcaac
tgcccggcaaggttgaaagaaagcttgattcattttgcttctaaagatgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggcaagggagcgagtaaaacgctggctagatac
ggcttaaatgtgttagaaaaaagcgaagctgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttgaaccctaaaaacagcgatatggccaaagaaaagcaagaaaactcttct
gttttcagtcataaaacgattgttttaaccggcacgctttccaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgctggctcaaaactcgctctagcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaagcgccttaaagaatttgattaa
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