Helicobacter pylori F32: HPF32_0589
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Entry
HPF32_0589 CDS
T01911
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
heq
Helicobacter pylori F32
Pathway
heq03030
DNA replication
heq03410
Base excision repair
heq03420
Nucleotide excision repair
heq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
heq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF32_0589 (ligA)
03410 Base excision repair
HPF32_0589 (ligA)
03420 Nucleotide excision repair
HPF32_0589 (ligA)
03430 Mismatch repair
HPF32_0589 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
heq03032
]
HPF32_0589 (ligA)
03400 DNA repair and recombination proteins [BR:
heq03400
]
HPF32_0589 (ligA)
Enzymes [BR:
heq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPF32_0589 (ligA)
DNA replication proteins [BR:
heq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPF32_0589 (ligA)
DNA repair and recombination proteins [BR:
heq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPF32_0589 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPF32_0589 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPF32_0589 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPF32_0589 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
RNA_ligase
HHH_5
Nlig-Ia
RabGAP-TBC
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAJ58171
LinkDB
All DBs
Position
complement(641571..643541)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQANSPTQ
KVGAITPNSFNKNSHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFNSIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDIAKEKQESSSVFSHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKGFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagagtatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtaagcgatgcggtctatgataaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagccaattcccctacccaa
aaagtgggggctattacccccaattcgttcaataaaaactcccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcacccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgaaggcgaccactaggggcaacggcttagaaggggaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaattaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctaggttttaattctattcaatacttaagcctgaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctttagaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggtcgttgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcacgagcttttatgcgaagagatttttacttattgtcaaaacctcaac
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaattaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggtaagggagcgagcaaaacactggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgaatttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttgaaccctaaaaacagcgatatagccaaagaaaagcaagaaagctcttct
gttttcagtcataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaaggatttgattaa
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