Herbaspirillum sp. DW155: HBDW_04900
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Entry
HBDW_04900 CDS
T10195
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
hew Herbaspirillum sp. DW155
Pathway
hew01501
beta-Lactam resistance
hew01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
HBDW_04900
01503 Cationic antimicrobial peptide (CAMP) resistance
HBDW_04900
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hew02000
]
HBDW_04900
01504 Antimicrobial resistance genes [BR:
hew01504
]
HBDW_04900
Transporters [BR:
hew02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
HBDW_04900
Antimicrobial resistance genes [BR:
hew01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
HBDW_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
Motif
Other DBs
NCBI-ProteinID:
BEV13702
LinkDB
All DBs
Position
complement(547955..551101)
Genome browser
AA seq
1048 aa
AA seq
DB search
MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS
VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA
AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT
ERAMRIWIDPNKLIGLSLTPGDVTAAITAQNALVAGGTLGALPSPGTQQIAATVVVNGQL
TSPEQFGNIVLRANANGSTVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL
GTATAVHKKMEELSKYFPAGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ
NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM
SEEGLSPPEATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF
SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNTTASGYQGLIGRMLTKAGRY
MIVYVVILACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTARTLEVVKQIEQYYLKD
PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSERDKSQSADAIAGKAFGAFSRIKDAIVF
PLNPPPIPELGNATGFTFRLQDRAGLGHAALVQARNQVLGMAAQSKVLAGVRPEGLEDAP
QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNMGRQQRVIVQADANRRLQPED
LTGLYARNSNGGMVPFSAFVTAKWINGPVQLVRYNGYPAMKIAGGAAPGRSTGEAMAEME
SFVTKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV
PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGMGLIEATLE
AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF
VVVRKVFKGSERQRKFDAEHSPKIDSGE
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagttctttattgatcgccccgtatttgcgtgggtgctagcgatcttcatcatg
ctggccggtgcgctggccatcaccggcctgccggtgtcccagtaccccaacattgcgccg
ccgaccatcgtggtcaccgccacctatccgggtgcgaccgcgcagaccctggacgattcg
gtgaccagcctgatcgaacaggaaatgaacggcgccgatggcctgcaatacatcgagtcg
caaagccaggccaacggccaggtgcagatcaccatcaccttctcgcccgaaaccaatccg
gacctggcggcggtggatgtccagaaccgcctgaagcgcgtcgaggcccgcctgccggcg
gccgtgacgcaacagggcgtgcaggtcaccaagtcgcgttcgaacttcctgctcttcatc
ggcttgtcttccaccgatggcaagctcgatccggtggcgctgggtgactatctgtcgcgc
aatgtcctgaacgaaatcaagcgcgtgcccggcgtgggccaggcacagctgttcggcacc
gaacgcgccatgcgcatctggatcgatccgaacaagctgatcggcctgagcctgacgccc
ggcgatgtgaccgccgccatcaccgcgcagaacgcgctggtggccggtggcaccctgggc
gccctgcccagccccggtacccagcagattgccgcgaccgtggtggtcaacggccagctg
acctcgcccgagcagttcggcaacatcgtgctgcgcgccaatgccaatggctcgaccgtg
cgcctgcgcgacgtggccagggtggaagtgggtggccagagctatgacacctccggtcgc
ctggacggcaagccttcatcgttcatcggcgtgcagctctcgcccaccgccaatgcgctg
ggcaccgccacggccgtgcacaagaagatggaagaactgtccaagtacttcccggccggt
gtgaagtacaccatcccctacgacacctccaagttcgtcaagatctcgatcgaggaagtg
gtcaagaccctgatcgaagccatcgtgctggtgttcctggtgatgttcctgttcctgcag
aacatccgctacaccatcatccccaccatcgtggtgccggtggcgctcttgggtaccttt
gccaccctgctgttgttcggcttctcgatcaacgtgctgaccatgttcggcatggtgctg
gccatcggtattctggtcgacgatgccatcgtggtggtggaaaacgtcgaacgcatcatg
agcgaggaaggactctcgccgcctgaagcgacccgcaaggcgatgggccagatcagcggt
gcgctcatcggcatcaccctggtgctgatcgcggtgttcatcccgatggccttcttcggg
ggtgcggtgggtgcgatctatcgtcagttctcgctgtcgatggtggcctccatggtgttc
tcggtgctgatggccttcaccctcacaccggcgctgtgcgcaaccatcctgaaacccgtg
gaaaagggtcaccaccacgagaagaagggcttcttcggctggttcaaccgcaagttcaac
accaccgccagtggctatcagggcttgatcggccgcatgctgaccaaggccggccgctac
atgatcgtctacgtggtcattctggcctgcgtgggtctgctctacgtgcgcctgccggcc
tccttcctgcccaacgaagaccagggctacatcatcaccaacgtccagctgccgccgggc
gccagcacggcacgcacccttgaggtggtcaagcagatcgagcagtactacctcaaggat
ccggccgtggaacacgccattgcggtgctgggttattcgttctccggtaacggtcagaac
gcagcgctggtgttcactccgctcaaggactggtccgagcgtgacaagtcgcaatcggcc
gatgccatcgccggcaaggccttcggtgccttctcgcggatcaaggatgcgatcgtgttc
ccgctgaacccgccgccgattccggaactgggtaacgccaccggtttcacgttccgtctg
caggatcgtgccggcctgggtcatgctgcgctggtgcaggcacgcaaccaggtcctgggc
atggccgcgcagagcaaggtgctggccggtgtacgtccggaaggtctggaagatgcgccg
cagctgcaactggacatcgaccgcgacaaggccaatgcgctgggcgtgccgttctcgacg
atcaacagcgtgctctcgacggcactgggttcgtcctatgtgaacgatttccccaacatg
ggccgccagcagcgcgtgatcgtccaggccgatgccaaccgccgcctgcaacctgaagat
ctgaccggtttgtatgcccgcaactccaacggtggcatggtgccgttctcggccttcgtg
acggccaagtggatcaacggcccggtgcagctggtgcgctacaacggctatccggccatg
aagatcgccggtggtgccgctcccggacgcagtacgggtgaagccatggccgagatggaa
tccttcgtgaccaagctgccgccgggcttcggtttcgaatggaccggccagtcgctggaa
gaaaagacctccggcaaccaggcgcccgcgctgtatgccctgtcgctgatcgcggtgttc
ctggtgctggcggccttgtatgaaagcacctcgatcccgctggcggtgatgctggtggtg
ccgctgggtatcctcggtgcactgctgggtgtgacgctgcgcgccatgcccaacgacgtg
tacttcaaggtggggatgattgcggtggtgggtctgtcggccaagaacgcgattctgatc
atcgagtttgccaaggatctgcaggcgcaaggcatgggcctgatcgaggcgacgctggaa
gcggtacacctgcgcttccgtccgatcatcatgacctcgctggccttcatcctcggtgtg
ctgccgctggccatcgcctctggtgccggttcggccagccagcgcgccatcggtaccggc
gtcatgggcggcatgattaccgccaccgtgctggccgtgttcctggtgccgatcttcttc
gtggtcgtgcgcaaagtattcaagggcagcgagcgtcagcgcaagtttgacgccgagcac
tcgcccaagattgatagtggagaatga
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