Herbaspirillum sp. DW155: HBDW_40650
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Entry
HBDW_40650 CDS
T10195
Symbol
mdeB
Name
(GenBank) alpha-ketoglutarate dehydrogenase
KO
K00163
pyruvate dehydrogenase E1 component [EC:
1.2.4.1
]
Organism
hew Herbaspirillum sp. DW155
Pathway
hew00010
Glycolysis / Gluconeogenesis
hew00020
Citrate cycle (TCA cycle)
hew00620
Pyruvate metabolism
hew00785
Lipoic acid metabolism
hew01100
Metabolic pathways
hew01110
Biosynthesis of secondary metabolites
hew01120
Microbial metabolism in diverse environments
hew01200
Carbon metabolism
hew01210
2-Oxocarboxylic acid metabolism
Module
hew_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
hew00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
HBDW_40650 (mdeB)
00020 Citrate cycle (TCA cycle)
HBDW_40650 (mdeB)
00620 Pyruvate metabolism
HBDW_40650 (mdeB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
HBDW_40650 (mdeB)
Enzymes [BR:
hew01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.1 pyruvate dehydrogenase (acetyl-transferring)
HBDW_40650 (mdeB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDH_E1_M
Transketolase_C_1
Transketolase_N
Transketolase_C
Transket_pyr
Motif
Other DBs
NCBI-ProteinID:
BEV17277
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Position
complement(4532186..4534867)
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AA seq
893 aa
AA seq
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MSRPSDSDIPRDIDIDAQETQEWLQALQSVLTEAGPERARFLLSRLSAAARQWGVNWRDA
RNTPYVNTIRPEQEPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASYA
SAADLFEVGFNHFFRARDAQFAGDVVYFQPHSAPGIYARAFLEGALAEEDLAYYRREIEA
KRVGRQGLSSYPHPWLMPQFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWG
VFGDGEMDEPESLAALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAG
WNVIKLLWGSDWDGLFARDKDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRA
IGATLTDEEINRLRRGGHDMKKIYSAYQAAARHRGQPTVILAQTKKGYGMGAAGEGKMTT
HQQKKLDEESLLQFRDRFKLPLSDAQCRELAFYKPADDSPEMKHLHARRAALGGYLPRRH
VGPARRAVPALEAHSRFALEADGKEMSSTMALVRQLGNLLKDKDFGQYVVPIVADEARTF
GMANLFRQVGIYSSQGQLYEPEDIGSILYYREARDGQILEEGITEAGAISSWTAAATAYS
VHGTPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGRTTLGGEGLQHQDGSSL
VTAASIPNCVSYDPAYAYELAVILDEGMRRMMERGDDVFYYLTVTNENEAQPSLPDGVQE
GILRGLYCLRRKPGAQVRLLGSGPMLKEAVAAAALLQQHWQIEAEVWSVTSYTELARDGV
AAHRKQRLSGTEVEPYVTQQLQGSDTPVIAVSDYIRTLPESIRAFVPASYVTLGTDGFGR
SDTRVNLRDFFEVDARWIAYTALCEVWERDRARLDEAARLLGIVTAQSWSNTV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccccagcgacagcgatatcccgcgcgatatcgacatcgatgcccaggaaacc
caggaatggctgcaagccctgcaaagcgtgctgaccgaggccggcccggaacgtgcgcgc
ttcctgctctcgcggctgtcggcggcggcccggcaatggggcgtgaactggcgcgatgcg
cgcaacacgccctacgtcaacactatccggcctgaacaggaaccgccttttccgggtggc
tcggatgcgcaggccatcgaagagcgcatcgccagcatcatgcgctggaatgcactggcc
atggtggtgcgcgccaatcgcgcttatggcgagctgggcgggcatatcgccagctatgcc
tcggcggcggatctgttcgaggttggcttcaaccacttcttccgcgcccgcgatgcgcag
ttcgccggtgatgtcgtctacttccagccgcattccgcgccgggcatctatgcacgggct
ttcctcgaaggcgcgctcgccgaagaggacctggcctactaccggcgcgagatcgaggcc
aagcgtgtcgggcgccagggtctgtcgtcctatccgcatccctggctgatgccgcagttc
tggcagttcccgaccggctccatggggatcggtcctatcaatgcgatctaccaggcgcgc
ttcctgcgctacatggaacatcgcggcctgttgcaggatcaggggcgcaaggtctggggc
gtgttcggcgatggcgagatggacgagcccgaatcgctggctgcgctctcgctggcctcg
cgcgagaagctggacaatctcatcttcgtggtcaactgcaacctgcagcgcctggatgga
ccggtgcgcggcaatggccacatcgtcgatgagctggaaacgctctttgccggggctggt
tggaacgtcatcaagctgctgtggggttcggactgggatggtctgtttgcccgcgacaag
gacggcgaactggtcgatgccctgaaccgtacggtagacgggcaattgcagaccttcgcc
gccaacgatggcgccttcaaccgccagcacttcttcggccagaccccgggtacgcgcgcc
atcggtgccacgctcaccgatgaggaaatcaatcgcctgcgccgtggcgggcacgacatg
aaaaagatttactcggcctaccaggccgcagcccgccatcgtggccagccgacggtgatc
ctggcgcagaccaagaagggctacggcatgggcgcggcgggcgaaggcaagatgaccacg
caccagcagaagaagctggatgaagaaagcctgctgcaattccgtgaccgcttcaagctg
ccgctgagcgatgcgcaatgccgtgagctggccttctacaagccggccgatgacagtccc
gagatgaagcacctgcacgcgcgccgcgccgccctcggcggttatctgccgcgccgccat
gtggggcccgcccggcgcgccgtgccggcactggaagcgcatagcaggtttgcgctggaa
gccgatggcaaggaaatgtcctccaccatggccctggtgcggcagctcggcaatctgttg
aaggacaaggatttcggccagtacgtggtgcccatcgtcgccgatgaggcgcgtaccttc
ggcatggccaacctgttccgccaggtcggcatctattcgtcgcaagggcagttgtatgag
ccggaggatatcggttccatcctctactatcgtgaagccagggacgggcagatcctggaa
gagggcatcaccgaagccggtgcgatttcctcatggacggctgcggcgaccgcctattcg
gtgcatggcacgccgatgctgccgttctacatctattactcgatgttcggtttccagcgc
atcggcgacctgatctgggcggcggcggaccagcgtgcgcgcggcttcctgatcggcgcc
acgtcggggcgcacgaccctgggtggcgagggcttgcagcatcaggatggcagcagcctc
gtcacggcggcatcgattccgaattgcgtttcgtatgatccggcctatgcctatgagctg
gcggtgattctggatgagggcatgcgtcgcatgatggagcgcggcgatgacgtgttctac
tacctcaccgtcaccaacgagaacgaagctcaacccagtttgccggatggcgtgcaggag
ggcatcctgcgcggcctgtactgcctgcgccgcaagccgggggcgcaggtgcggctgctg
ggttccggtccgatgttgaaggaagcggtggcggcggctgcgctgctgcagcagcactgg
cagatcgaggccgaggtgtggagcgtgaccagttacaccgaactggcgcgcgatggcgtg
gcggctcaccggaagcagcgcttgtcgggaacggaggtggagccttacgtgacgcagcag
ttgcagggcagcgatacgccggtcattgcggtgagcgactacatccgcaccttgccggag
agcattcgcgctttcgtgccggcgtcttatgtgacgctgggcacggacgggtttgggcgc
agcgatacgcgggtgaatctgcgtgatttctttgaggtcgatgcgcgctggattgcttat
acggccttgtgcgaagtgtgggagagggaccgggcgcggctggacgaggctgcgcggctc
ctgggcatcgttaccgcacagtcctggtcgaatacagtctga
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