Helicobacter pylori XZ274: MWE_0900
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Entry
MWE_0900 CDS
T02130
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hey
Helicobacter pylori XZ274
Pathway
hey03030
DNA replication
hey03410
Base excision repair
hey03420
Nucleotide excision repair
hey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MWE_0900 (ligA)
03410 Base excision repair
MWE_0900 (ligA)
03420 Nucleotide excision repair
MWE_0900 (ligA)
03430 Mismatch repair
MWE_0900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hey03032
]
MWE_0900 (ligA)
03400 DNA repair and recombination proteins [BR:
hey03400
]
MWE_0900 (ligA)
Enzymes [BR:
hey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MWE_0900 (ligA)
DNA replication proteins [BR:
hey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MWE_0900 (ligA)
DNA repair and recombination proteins [BR:
hey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MWE_0900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MWE_0900 (ligA)
MMR (mismatch excision repair)
DNA ligase
MWE_0900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MWE_0900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
RNA_ligase
HHH_5
RabGAP-TBC
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AFJ81717
LinkDB
All DBs
Position
810320..812293
Genome browser
AA seq
657 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEENYHILIREREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHPIIRPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMQLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYTSNQEFIRSLFDLLSPKNSDMAEEKQESSSVFSHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSTKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEEFD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtaagcgatgcagtctatgacgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagccaattcacctacccaa
aaagtgggggctattaccaccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagcgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagtgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgaaggcgaccactaggggcaacggcttagaaggggaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcctaaacgctaatgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgaggcagcttgatagcaaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctaggttttagcgctattcaatacttaagcctaaacaaaaaccaccaagaaatagaagaa
aattaccacatcctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctttagaaaaacacacaaagattgtaggagtcatt
aaccaagtggggcgtagcggggcgatcacaccggtcgctcttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgttgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagagacggctcgcaacaccctattatacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaaccttaac
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctagatttgtatgctttaaaattagaagatttaatgcaactagacaaattcaaaatcaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgcttg
attaacgctttggggattgagcatatcggtaagggagcgagtaaaacgctggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatacgagcaatcaggaatttatccgatcgtta
tttgatttgttgagtcctaaaaacagcgatatggctgaagaaaagcaagaaagctcttct
gttttcagtcataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcactaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaagaagaatttgattaa
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