Humidisolicoccus flavus: U2H20_01155
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Entry
U2H20_01155 CDS
T11070
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hfa Humidisolicoccus flavus
Pathway
hfa03030
DNA replication
hfa03410
Base excision repair
hfa03420
Nucleotide excision repair
hfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U2H20_01155 (ligA)
03410 Base excision repair
U2H20_01155 (ligA)
03420 Nucleotide excision repair
U2H20_01155 (ligA)
03430 Mismatch repair
U2H20_01155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfa03032
]
U2H20_01155 (ligA)
03400 DNA repair and recombination proteins [BR:
hfa03400
]
U2H20_01155 (ligA)
Enzymes [BR:
hfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U2H20_01155 (ligA)
DNA replication proteins [BR:
hfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U2H20_01155 (ligA)
DNA repair and recombination proteins [BR:
hfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U2H20_01155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U2H20_01155 (ligA)
MMR (mismatch excision repair)
DNA ligase
U2H20_01155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U2H20_01155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WTM64840
LinkDB
All DBs
Position
247078..249342
Genome browser
AA seq
754 aa
AA seq
DB search
MSELQRASDRASELRSAIEQARVDYYEREAQVLSDADYDSKIHELEALEREFPELQSEDS
PTQSVGGQASVLFSPVAHAERMLSLDNVFDLDELREWAAKAQSLAGKSEIAWLCELKIDG
LALNLRYEHGILVSAATRGDGRTGEDVTENATLIPGIPKQLAGTGHPSIVEVRGEVYFTV
EAFRALNAKQVEAGEREFANPRNAASGSLRQKAQGKKAAAKALMHDRLKALSLAVHGIGA
WENPPVASQSEVYALLKTWGLPISTTFSVVSSVDEVVAYVERYGRERQTVAHEIDGVVVK
VDDLALHDELGATSRAPRWAIAFKYPPEQVNTKLLDIVVGVGRTGRATPYGVMEPVKVAG
SVVRQATLHNQDVVRSKGVLIGDTIVLRKAGDVIPEILGPVPELRDGTERAFEMPKHCPE
CGSELRAMKEGDIDLRCPNAQTCPAQVRGRVEHIGSRGGLDIEALGEVTAAALTQPKFPA
EPPLTTEAALFELTLDDLMPIEVVVKDAETGIEVPDDDGEGRIRTPFRRTTLVYPPEAEG
LTAAERRQQKITKNHPQVAPSANALKLIEELELGKTKDLWRQLVSLNIRHVGPVAARALA
DWFGSLDAIRAASREELAEVEGVGGIIADSLLEWFEVDWHQEILERWRAAGVSFAIPGHA
GPGTQRDTEGVLQGLTIVATGALDGFTRDGAKEAIIAAGGKAASSVSKKTDFVAAGPGAG
SKLQKAEDLGIRVLDAGEFAILVTDGPDALPTSA
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaactgcaacgagcgagtgatcgggcgtccgaactccgcagtgcaatcgaacaa
gctcgggtcgattattacgagcgcgaagcgcaggtgctgagcgatgcggactacgattcg
aaaattcacgagctcgaagcgcttgaacgcgaattcccggaacttcagagtgaagattcg
ccgacgcaaagcgtcggtggtcaagcctccgtgctcttctccccggtcgctcacgctgaa
cgcatgttgagtctcgacaatgtgttcgatctcgacgagcttcgcgagtgggcggcgaag
gcgcaatccctcgcgggcaagagcgagatcgcttggctctgcgaattgaagatcgacggt
ctcgcgctgaacctcaggtacgagcacgggatcctcgtgagcgccgcgacccgcggcgac
ggccgaaccggtgaagacgtcaccgagaacgcgacgttgatccccggaattccaaagcag
cttgcgggaaccgggcacccttcgatcgttgaagtacgtggcgaggtctacttcaccgtc
gaagcattccgtgcgttgaatgcaaagcaggtcgaggcaggggagcgcgaattcgcgaat
ccgagaaacgccgcgagtgggtccctgcgccagaaggcgcaggggaagaaggccgcagcg
aaggcgctcatgcacgatcggctcaaggcactgagccttgcggtgcacggcatcggcgcc
tgggagaatccgcctgtggcttcgcagagcgaggtgtacgcgctcctgaaaacctggggt
ctcccgatcagcacgaccttttcggtggtgtcctccgttgatgaagtcgtggcctatgtc
gagcgctacggccgtgagcgtcagacggtcgcacacgaaatcgatggcgtcgttgtcaag
gtcgacgacctcgcactccacgacgaactcggtgcgaccagccgtgctccccggtgggcg
attgcattcaaatatccgccagaacaggtcaatacgaaactgctcgacatcgttgtcggc
gttgggcgtaccggtcgggcaactccgtacggagtcatggaaccggtcaaggtcgcagga
agcgtggttcggcaggccacactgcacaaccaagacgtcgtacgttcgaaaggtgtcctg
atcggagacacgatcgtgctgcgaaaagcgggcgacgtgatccctgaaatccttggcccg
gtcccagagttgcgagacggcacggaacgcgcgttcgagatgccgaagcactgtcccgaa
tgtgggagcgaacttcgagcaatgaaagagggcgacatcgatctgcgatgcccgaacgcg
cagacctgtcccgcccaggtacgcgggcgggtcgaacacatcgggagtcgtggtggcctc
gacatcgaggcgctcggagaggtgaccgcggccgcattgacgcagccgaaattcccggcc
gagccgcccttgaccaccgaggccgcgctcttcgagctcaccctcgacgacctcatgccg
atcgaagtggtcgtgaaagacgccgaaaccggtatcgaagtgccagacgacgacggcgag
ggccggatccggaccccattccgtcgaacgactctcgtctacccacccgaagccgagggc
ctcactgccgcagaacgtcgtcagcagaagatcacgaaaaatcacccgcaggtcgcaccg
agtgcaaacgcactcaaattgatcgaggaactcgagctcgggaagacgaaggacctttgg
cgtcaactcgtgtcgctgaacatccggcatgtcggtccggttgcagcccgggcactcgct
gactggttcggctcgcttgacgcaatccgtgccgcgagcagggaagagctcgcagaggtc
gaaggcgtcggcggcatcatcgccgactccctgctcgaatggttcgaggtcgattggcac
caggagattctcgagcggtggcgggcggcaggggtctccttcgcgatcccgggtcacgca
ggaccgggaacacagcgcgacaccgaaggagtgctgcaggggctcacgatcgtggcgaca
ggagcactcgacggtttcactcgcgacggagcaaaagaggcgatcatcgccgccggagga
aaagcagcatcgagcgtctcgaagaagacggacttcgtcgcagcaggacccggagccggg
tcgaagttgcagaaagcagaagacctcgggatccgcgtgctcgatgccggcgagttcgcg
attctggtgaccgacgggcccgacgcgctcccgacgagcgcctga
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