Helicobacter felis: HFELIS_04980
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Entry
HFELIS_04980 CDS
T01375
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hfe
Helicobacter felis
Pathway
hfe03030
DNA replication
hfe03410
Base excision repair
hfe03420
Nucleotide excision repair
hfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFELIS_04980 (ligA)
03410 Base excision repair
HFELIS_04980 (ligA)
03420 Nucleotide excision repair
HFELIS_04980 (ligA)
03430 Mismatch repair
HFELIS_04980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfe03032
]
HFELIS_04980 (ligA)
03400 DNA repair and recombination proteins [BR:
hfe03400
]
HFELIS_04980 (ligA)
Enzymes [BR:
hfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HFELIS_04980 (ligA)
DNA replication proteins [BR:
hfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HFELIS_04980 (ligA)
DNA repair and recombination proteins [BR:
hfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HFELIS_04980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFELIS_04980 (ligA)
MMR (mismatch excision repair)
DNA ligase
HFELIS_04980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFELIS_04980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
Zn_ribbon_15
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CBY82582
UniProt:
E7A9V4
LinkDB
All DBs
Position
complement(475469..477670)
Genome browser
AA seq
733 aa
AA seq
DB search
MIQTFQDYQACVERACQYAHHYYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEHSPTQ
RVGDALLSYLPKHTHLERMWSLDNVFDLEGLQTWIARIFKVYPHARFTCSPKLDGVSLNL
FYDQGKLVSATTRGNGIEGELVTHIAKTIPSIPLRIAPTEPLEIRGEVTIENADFEKINA
ERAKLNQPLFANPRNAAAGSLRQLDPRISAKRKLSFTPWGLGRCAPTLPSFKAMMDCLLE
NHFLPMPFSLCGSVEEIQQVYTELHAQRERAKVGMDGMVVVVDDFAMQKELGFTLKAPRF
AIAYKFPALEKHTRLLEVIAQVGRSGAITPVARLEPVNLDGAQIARATLNSYTDIQQKDL
QLNDMVVVLRSGDVIPQVIKPLVHLRDGSQKPIIPPNHCPSCESLLEQQPLNICPQCHLP
LLLKDKPNFCPSCARFAPHAHLKNARSCPSCAQALEYKPFCYRCNLDLSAHARALCCVNP
SCSAKLHASLVYFASKQGLEIAGLGDKVVKQLLEAKLISQISDLYTLRLEDLLQLEGWKH
KRAQNLLDAIAKTKHAPLWRFINALGIENIGKGASKKLAGILGLEVFDQDYSGYQRAFKK
IFQGAREDQKGDYKSARAFWEFVQTHRAKIAHLMRLIEPTIAEKRAPQCGFFQGKVVVIT
GSFSIPRDALRQYLEDLGAEVKGHLSAKTDLLLCGDKPGSKLEEAKKHNISIMGIDALRV
QFKKSTPPPPFTL
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaacttttcaagactaccaagcttgcgtagaacgcgcctgtcaatacgcccat
cactactatgtattagatgacccgctcgttagcgattttgaatacgacacgctctaccaa
caaatccaagattacgagcacgcacaccctgagcaaattttagaacactctcctacccaa
cgcgtgggggacgctctgctctcttatttgcctaaacacacacacctagagcgcatgtgg
agtttggataatgtttttgatttagaaggtttgcaaacttggatcgcgcgtatttttaag
gtttatccacatgcccgcttcacctgctcgcctaagctcgatggggtttctctcaatctc
ttttacgatcaaggtaaattagtcagtgctaccacgcggggcaatggcattgaaggcgag
cttgtaacccatatagctaaaaccatcccctctatccctttgcgcatcgctcccacagaa
cccctagagattcgcggagaggtaaccattgagaacgcagattttgaaaagatcaatgca
gagagagcaaagttaaaccagcccctttttgctaatccacgcaatgctgcagcggggagt
ttgcgccagctagacccacgcatcagtgccaagcgcaagctgagtttcaccccttggggc
ttggggcgttgcgcccccactttgcccagctttaaagccatgatggattgtttgctagaa
aatcactttttacccatgccctttagcctgtgtgggagtgtggaggaaatccaacaggtc
tatacagaactgcatgcccaaagagagcgcgccaaagtgggcatggatggcatggtggtg
gtagtggatgattttgcgatgcaaaaagaactaggtttcaccctcaaagccccgcgcttt
gccattgcttacaaattccccgctcttgaaaaacacacccgtttattggaggttattgca
caagtggggcgcagtggggcgatcactccggtagcgcgcttagaacctgtcaatttggac
ggcgcacagatcgcgcgtgcgactttgaatagctacacagacatccagcaaaaagacctc
cagctcaatgatatggtggtggtgcttagaagtggggatgtgatccctcaagtgatcaaa
cccttagtgcatttgcgcgatggcagccaaaaacccatcatcccccccaaccactgccct
agttgtgagagcctcttagaacaacaacctcttaatatctgccctcaatgccacttgcct
cttttacttaaagataaacccaatttttgcccctcttgcgcgcgctttgctccccatgcc
cacctcaaaaacgcgcgctcttgtccttcatgcgcgcaagcactagaatacaaacccttt
tgttaccgctgtaacttggatttgagcgcccacgcgcgcgctctctgctgtgttaatccc
tcttgtagtgcaaaattgcatgctagcttggtttattttgcctccaaacaaggactagag
atcgccggattgggggataaggtggtcaaacaactcttagaagccaaattgattagccaa
attagcgatctctacactctacgcctagaggatttgctccaattagagggttggaagcat
aaacgcgcccaaaatctgctagatgccatcgccaaaactaaacacgctcctttgtggcgt
ttcattaacgctttggggattgaaaatatcggtaagggagcgagcaagaagctcgcaggt
attctaggcttggaggtgtttgatcaagattatagcgggtatcaacgcgcctttaaaaag
atatttcagggagctagagaggatcaaaagggggattataaaagcgcgcgcgcgttttgg
gagtttgtgcagacccatagggcaaaaatcgcgcatttaatgcgcctcattgaacccacc
attgcagaaaagcgcgctcctcagtgtggattttttcagggcaaggtggtggttattacg
gggagtttttctattcctagagatgcgttaaggcaatatttagaagatttaggcgcagaa
gtcaagggacatttgagcgctaaaaccgatttgcttttgtgtggggacaaacccggaagc
aagttagaagaggccaaaaaacacaacatctccatcatgggaattgacgcgttgcgcgtg
caatttaagaaaagcacacccccccctccttttactctctaa
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