KEGG   Helicobacter felistomachi: NHP21005_05620
Entry
NHP21005_05620    CDS       T10843                                 
Name
(GenBank) hypothetical protein
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hfi  Helicobacter felistomachi
Pathway
hfi03030  DNA replication
hfi03410  Base excision repair
hfi03420  Nucleotide excision repair
hfi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NHP21005_05620
   03410 Base excision repair
    NHP21005_05620
   03420 Nucleotide excision repair
    NHP21005_05620
   03430 Mismatch repair
    NHP21005_05620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hfi03032]
    NHP21005_05620
   03400 DNA repair and recombination proteins [BR:hfi03400]
    NHP21005_05620
Enzymes [BR:hfi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NHP21005_05620
DNA replication proteins [BR:hfi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NHP21005_05620
DNA repair and recombination proteins [BR:hfi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NHP21005_05620
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NHP21005_05620
   MMR (mismatch excision repair)
    DNA ligase
     NHP21005_05620
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NHP21005_05620
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase RNA_lig_T4_1
Other DBs
NCBI-ProteinID: BEG56874
LinkDB
Position
complement(526970..528208)
AA seq 412 aa
MIQTLQDYHRLVDKLCTLAHHYYVLAKPLVSDEIYDQLYHEALAYEEAHPADILAHSPTQ
RVGGEVVPFLPKQEHKVRMWSLDNVFNFKELQEWLKRLSDFAKAPLESFVCSPKLDGASL
NLYYENGHLVSASMRGNGVVGELVTHNAKTIRSIPLKIPYTKPIEIRGEVVLLKEDFKAL
NAQRLAQNLAPFANARNASVGSLRQLNSRVSAQRKLTFYPWGLGLCAQEFTSFKQAMQAV
CEWGFLGLDFVACESAEEIQNTFESFCASRASAPYEADGMVAMLDNLALQNALGFTIKAP
RFAIAYKFATAQKCTKLLKVINQVGRSGAITPVGVLEPVSVQGALVSRATLDNYTQIEQQ
DLQINDIVVVVRSGDVIPKILRPLKELRDHTQAKITPPPIAPAVPPPCKPKL
NT seq 1239 nt   +upstreamnt  +downstreamnt
atgatacaaaccctacaagactaccaccgcttggtcgacaagctttgcactctagcccac
cactactatgtgttggcaaaacccctagtgagcgatgagatttacgatcaactctaccac
gaagccctagcctatgaagaggcgcaccccgccgacattttagcccactcgcccacccaa
cgcgtgggcggcgaagttgtgccctttttacccaaacaagaacataaggtgcgtatgtgg
agcttagacaatgtctttaatttcaaagagttgcaagagtggctcaaacgcctaagcgac
tttgccaaagcccccctagagtccttcgtctgctcacccaaactagacggggcatcgctc
aatctctactacgaaaacgggcatttggtgagcgcgagcatgcggggtaatggcgtggtg
ggtgagctcgtgacccacaacgccaaaacgatccgctccattccgcttaaaatcccctac
accaagcccattgaaattaggggcgaagtggtcttattaaaagaagactttaaagcctta
aacgcccaaagactggcgcaaaatttagccccctttgccaacgcccgcaatgccagcgta
ggcagcttgcgccaattaaactcccgtgtgagcgcgcaaagaaaactcaccttttaccca
tgggggctggggctttgcgctcaagaatttacaagctttaaacaagccatgcaagctgtg
tgtgaatggggctttttgggcttagactttgtagcgtgtgagagtgctgaagagatacaa
aatacttttgagtctttttgtgctagccgcgctagcgctccctatgaagccgatggcatg
gttgccatgctcgacaatctagccttacaaaatgcgctgggttttaccatcaaagccccc
cgttttgccatcgcctataaattcgccaccgcccaaaaatgcaccaaacttttaaaagtg
atcaaccaagtggggcgcagcggggcaatcacccccgtgggcgttttagagcccgtgtcc
gtgcaaggagcgttggtgtcgcgtgccaccctagacaattacacccaaatagagcaacaa
gacttacagatcaacgacattgtggtggtggtgcgcagtggcgatgtgattcctaaaatt
ttacgccccctaaaagagttgagagaccacacccaagcaaaaatcacccccccacccatt
gccccagctgtgccaccgccttgcaagcccaagctttaa

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