Hyphococcus flavus: PUV54_10590
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Entry
PUV54_10590 CDS
T08821
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hfl
Hyphococcus flavus
Pathway
hfl03030
DNA replication
hfl03410
Base excision repair
hfl03420
Nucleotide excision repair
hfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PUV54_10590 (ligA)
03410 Base excision repair
PUV54_10590 (ligA)
03420 Nucleotide excision repair
PUV54_10590 (ligA)
03430 Mismatch repair
PUV54_10590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfl03032
]
PUV54_10590 (ligA)
03400 DNA repair and recombination proteins [BR:
hfl03400
]
PUV54_10590 (ligA)
Enzymes [BR:
hfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PUV54_10590 (ligA)
DNA replication proteins [BR:
hfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PUV54_10590 (ligA)
DNA repair and recombination proteins [BR:
hfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PUV54_10590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PUV54_10590 (ligA)
MMR (mismatch excision repair)
DNA ligase
PUV54_10590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PUV54_10590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
MutL
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WDI30405
UniProt:
A0AAE9ZHP1
LinkDB
All DBs
Position
2214627..2216792
Genome browser
AA seq
721 aa
AA seq
DB search
MSKTKKAASIPVNKLTPEQAEAELAQLATAIMRADEAYYKNDQPEVTDAEYDAMRRRNLL
IEKRFPKLKRDDSPTDKVGAPPSTKFEKSKHAIPMLSLDNAFNDDDVVEFDKRVRRFLGL
DEEGAVAYTAEPKIDGLSLNLRYEQGVLKVAATRGDGQTGENVTGNALTVDDIPQSIKNA
PAVLEIRGEIYMSHKDFEALNARLEAAGEDQFANPRNAAAGSLRQLDAAITSSRPLKFFA
YTWGELSEPIAETQWEAIGRLKKYGFKVNALTKRCESVGEMLAQYRKIEAERAKLGYDID
GVVYKVDRLDLQERLGFVSRHPRWATAHKFPAEKATTVLEEIDIQVGRTGKLTPVARLTS
VTVGGVVVSNATLHNADYIEEKDIRAGDTVVIQRAGDVIPQVVEVVKEKRPKGARKFKFP
DACPVCGSHAVNEVNPSTGKADVDRRCTGGLICAAQAKERLKHFVSRQAFDIEGLGTKQV
ENFFDIELIKEPADIFTLERRQEQGEIDLYTYKTKKDGAFSLDKEGNKQPTNTKSVENLF
AGINARRNISSARFINALGIRHVGETNARLFASHYGGFEGFYAAAVKGRDEASEAYQDML
SIDGVGALVARGVIDFFDEAHNREAVDHLLKEVTPEPVEAVSSSSEVAGKTVVFTGTLET
MTRDEAKARAQSLGAKVSGSVSGKTDYLVAGSGAGSKLKKAEELGVTVLTEEEWVKLAHS
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacaaagaaagccgcttctattcccgtcaataaactgacgccagaacaagct
gaagcggagctcgcgcagcttgcaacggcgatcatgcgcgccgatgaagcctattacaaa
aacgaccagcccgaggttacggacgcagaatacgacgcgatgcgccggcgcaatctgctg
atcgaaaagcggtttccgaaactgaagcgagatgactcgccaacagacaaggttggcgcg
ccgccctcgacgaagtttgaaaagtcaaagcatgcgatcccgatgctatcgctggacaat
gcatttaacgacgatgatgttgttgagtttgataagcgcgtgcggcgttttctgggcttg
gatgaagagggcgcggttgcttacactgcagagccaaagatcgacggcttgtcgcttaac
cttcgatatgaacaaggcgtattgaaagtcgcggcgacacgcggcgacggccagaccggc
gagaacgtgacgggcaatgcgttaactgtggatgatattccgcaatccatcaagaatgcg
ccggccgtgctcgaaatacgtggcgagatctacatgagccacaaagatttcgaagcgttg
aatgcgcgtctcgaagcggccggcgaagatcagttcgctaatccgcgcaatgccgccgcc
ggatccttgcgccagcttgatgcagcaattacgtcgtcaagaccgctcaagtttttcgcc
tatacatggggtgagctcagtgagcctattgccgaaacgcaatgggaagccatcgggcgg
cttaaaaagtacgggttcaaagtaaatgcgctgaccaaacgctgcgagagtgttggcgaa
atgttagcgcaataccgcaagatcgaagcggagcgcgccaagctcggttacgatattgac
ggtgttgtttataaggtggacaggctcgacctgcaggaacgcctaggatttgtttcgcgc
cacccgcgctgggcgacagcccataaatttccagcggaaaaagcgacaaccgtgcttgaa
gagatcgacattcaggttgggcgtacgggcaagttgacgccagttgcacgtctcacatcc
gtaactgtcggtggtgtcgttgtatccaatgcgacgctgcacaatgccgactacattgaa
gaaaaagatattcgcgctggcgatacggtggtgatccagcgcgctggcgacgtcattccg
caggttgtcgaagtcgtaaaggaaaagcgccctaaaggcgcgcggaaattcaaatttccc
gatgcttgccccgtttgcggttctcacgctgtcaacgaggtgaacccatcgaccggcaag
gcggatgtagaccgccgctgcactggcgggcttatctgcgccgcacaggccaaagaacgg
ttaaaacattttgtatcgcgccaagcgtttgacatcgaagggcttggaacgaagcaagtc
gagaatttttttgatattgaactcatcaaggagcctgcggacatattcacgctggaacgc
cgtcaggaacaaggtgaaatcgatctttacacctataaaacaaaaaaagacggtgcattt
tccctagacaaggaaggaaataagcaaccgacgaatacgaaatcggttgagaacttgttt
gcgggcatcaatgcacgcagaaatatttcaagcgcgcgcttcatcaacgcgctcggcatc
cgccatgtgggtgagaccaatgcacggctgttcgccagccattatggcgggtttgagggg
ttttacgcagcggcggtaaaggggcgcgatgaggcgagcgaagcctatcaggatatgttg
tccattgacggcgttggcgcgctggtggcgcgcggggtgatcgactttttcgacgaagcc
cacaatcgcgaagcagtggatcatctcttaaaagaagtgacgcctgaaccagtggaggcg
gtttcatcttcgagcgaggtcgcaggcaaaacggtggtgtttacaggcacgcttgaaacc
atgacccgcgatgaagcaaaggcgcgcgcccaaagcctcggcgcgaaagtttccggttca
gtctcaggcaagaccgattatttggtcgccggatcaggcgcgggttcgaaactgaagaaa
gcagaagagcttggcgttactgtgctgactgaggaagaatgggtcaaactcgcgcattca
tcataa
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