Hyphococcus formosus: ABFZ83_01260
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Entry
ABFZ83_01260 CDS
T10776
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hfo Hyphococcus formosus
Pathway
hfo03030
DNA replication
hfo03410
Base excision repair
hfo03420
Nucleotide excision repair
hfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABFZ83_01260 (ligA)
03410 Base excision repair
ABFZ83_01260 (ligA)
03420 Nucleotide excision repair
ABFZ83_01260 (ligA)
03430 Mismatch repair
ABFZ83_01260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hfo03032
]
ABFZ83_01260 (ligA)
03400 DNA repair and recombination proteins [BR:
hfo03400
]
ABFZ83_01260 (ligA)
Enzymes [BR:
hfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABFZ83_01260 (ligA)
DNA replication proteins [BR:
hfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABFZ83_01260 (ligA)
DNA repair and recombination proteins [BR:
hfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABFZ83_01260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFZ83_01260 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABFZ83_01260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABFZ83_01260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
MutL
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XMO97174
LinkDB
All DBs
Position
278850..281009
Genome browser
AA seq
719 aa
AA seq
DB search
MKKVTDSSLIPVNKLTPEQAEAELERLATEILNADKAYHENDRPAISDASYDALRRRNLL
IEKRFPKLKRKDSPSDRIGAAPSTRFEKSKHAVAMLSLDNAFSDEDVADFSKRVKKFLGM
ADDTIAFTAEPKIDGLSLNLRYEKGVLKVAATRGDGQVGENVTVNALTIKDIPQKLKTDI
DVLEVRGEVYMSHADFEALNARLEGEGEEVFANPRNAAAGSLRQLDAAITASRPLRFFAY
AWGELSEPLGDTQSAALDHLGKLGFQINPLTKRCDTTDEMIAHYRLIEEQRATLGYDIDG
VVYKVDRLDLQERLGFVSRAPRWAIAHKFPAEKAITILEDIDIQVGRTGKLTPVARLRPV
TVGGVVVSNATLHNAEEIERKDVRVGDSVVIQRAGDVIPQVVEVILDKRPKGAKEYEFPD
LCPVCGSHAVNEVNPNTGKADVDKRCTGGLICSAQAVERLKHFVSRQAFDIDGLGEKQIA
SFFEQGIIKEPADIFTLRSRQEAGQIDLFTYKKKSNGDLHLDKDGNKVATNEKSVNNLFD
AIDERRNIDSARLINALGIRHVGETNARLFARHYGGFEGFYDAAVKAKDETSDAYQDMLS
IDGVGALVARGVIDFFDEEHNRDALDHLLEEITPQKVAAASSSSAVAGKTVVFTGSLESM
TRDEAKAKAQSLGAKVSGSISGKTDYLVAGPGAGSKLKKAESLGVTVLTEEEWAKLASS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggtcaccgatagctcgttaatccccgtcaataagctaacgcccgaacaagcg
gaggcggaactcgagcgtctagcgacagagatcctgaacgcggacaaggcttatcacgaa
aatgaccgcccggcgataagtgatgcctcttatgacgcattacgtcgccgaaatctgttg
atcgaaaagcgcttccccaaactcaaacgcaaagactctccgtcagaccggatcggtgcc
gcgccatcaacgagattcgagaaatccaaacatgctgtcgcgatgttgtctttggataat
gcattcagcgatgaagatgtcgctgacttttccaaacgcgtgaagaaatttttaggcatg
gcggatgacacgattgcatttaccgctgagccaaagatcgatggcctttcgctgaatttg
agatatgagaaaggcgttttaaaagttgcggctacgcgcggtgatggtcaggttggtgag
aatgtaaccgtcaatgcactgacgattaaagacattccgcaaaagctgaaaaccgatatc
gacgttcttgaggtgcgcggcgaagtttatatgagccatgctgattttgaagcgctgaat
gcgcgcctcgaaggcgagggcgaagaagtattcgctaatccgcggaacgcagcggcgggg
tcattgcggcagcttgatgcagcgatcaccgcgtcacggccattgcgttttttcgcttat
gcttggggtgagctttcagagcccctgggtgacactcaatcggctgcgcttgatcacttg
ggcaagcttgggtttcaaatcaacccgcttactaagcgatgcgacacaaccgacgagatg
attgcgcattaccgcttgatcgaagagcagcgcgcgactctcggctatgatattgatggt
gtcgtctacaaggtcgatcgtcttgatctgcaagaacgtctcgggtttgtctcgcgggca
ccgcgctgggcaattgcgcataaattcccggcggaaaaggcaatcacgatccttgaagac
attgatattcaggtcggccgcacaggcaagttaacgccggttgcccggctcaggccggtt
acggttggcggtgtcgttgtttccaacgcaacgctgcacaatgcggaagagatcgagcgg
aaagatgtccgggttggggatagcgtggtcattcaacgcgccggcgatgttatcccgcaa
gtggtcgaagtcatcttggacaaacgtccgaaaggggcgaaggaatacgagtttcccgat
ctttgccccgtgtgcggatcgcatgctgtcaacgaagtcaatccgaatactggcaaggct
gatgtcgataaacgctgcaccggtggattgatttgttccgcgcaagcggtcgagcgattg
aaacattttgtgtcacgccaagcctttgacattgatggactaggcgaaaagcaaattgcg
tcatttttcgagcagggcatcatcaaggaaccggcggatatcttcaccctgcggtcgcgg
caagaagccggtcagatcgatctttttacctataaaaagaaatcaaatggcgatctccat
ctcgacaaggatggcaataaagtcgccaccaatgagaagtccgtaaacaacctattcgat
gcgattgatgaacggcgaaatattgattccgcgcggttgatcaatgcgctcggtattcgt
catgtgggtgaaaccaatgcccggctatttgcgcggcattatggcggctttgaagggttt
tacgatgctgccgtcaaagccaaggacgaaaccagcgacgcttatcaggatatgttgagc
atagatggcgttggcgcgttagtggcgcgcggggttattgatttctttgatgaggaacac
aaccgagacgcgttggatcatctccttgaggaaattacgccccaaaaggttgcggcagct
tcgtcttcaagtgcagtcgccgggaagacggtcgttttcaccggatcattagagagcatg
acccgcgacgaggcgaaggccaaagctcaaagtttgggggcaaaagtctctggttcgata
tcaggaaaaactgattatttggtcgcgggacccggtgccggttcgaaattgaagaaggct
gaaagtttgggcgtgaccgttctaacggaggaggaatgggccaaattggcgtccagctag
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