Halorhodospira halophila: Hhal_1878
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Entry
Hhal_1878 CDS
T00462
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hha
Halorhodospira halophila
Pathway
hha03030
DNA replication
hha03410
Base excision repair
hha03420
Nucleotide excision repair
hha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hhal_1878
03410 Base excision repair
Hhal_1878
03420 Nucleotide excision repair
Hhal_1878
03430 Mismatch repair
Hhal_1878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hha03032
]
Hhal_1878
03400 DNA repair and recombination proteins [BR:
hha03400
]
Hhal_1878
Enzymes [BR:
hha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hhal_1878
DNA replication proteins [BR:
hha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hhal_1878
DNA repair and recombination proteins [BR:
hha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hhal_1878
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hhal_1878
MMR (mismatch excision repair)
DNA ligase
Hhal_1878
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hhal_1878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_8
DUF7129
Motif
Other DBs
NCBI-ProteinID:
ABM62642
UniProt:
A1WY80
LinkDB
All DBs
Position
complement(2055209..2057344)
Genome browser
AA seq
711 aa
AA seq
DB search
MAEPTATREQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLV
SSDSPTQRVAGTAQEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIRDRLGVASVVYTGEP
KLDGISLSLTYQDGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEV
VIRKEDFERLNQARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALG
VESHWQVLECLAGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLA
VREQLGFTARAPRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVAR
ASLHNADELARMDVREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRFEERVQACPECG
SAVQRIEGEAAHRCVGGLYCPAQREGAILHFASRRALDIDGLGEKIVEQLVAKGLVVDLA
DLFRLGHAQLAGLERMGDKSADNLLAALDRARSTTLARFLYALGIPHVGEVTARRLAEAA
YGLMVAVPRGDRAALRAAAGLDAQTAITSEALLRVMAAPADDLEAIEDVGPVVARAIAGF
FAEPHNRQVVDHLCAAGVHWPEPDPPEQAESVSSLAGRAFVVTGTLETMTRDEAKAAIEA
CGGRVTGSVSRKTDYLVAGADAGSKLNKARELGVEVVNESGLRELLAGAGA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaacccaccgcgacccgcgagcaggcgcagcagcgcatggcgcagctgcgcggc
gagatcagcgagcacgactaccactactacgtcctcgatcgaccgacgatctcggatgcc
gagtacgacgccctgttccgggagctccagcgcctggaggccgcctaccccgacctggtc
agctccgactcgcccacccagcgggtcgcgggtacggcccaggaggggtttgaggcggtt
gtccacgacacccccatgctctccctggacaacgccttcgaggctgacgatctggtggat
ttcgaccgccgtatccgtgaccggctgggcgtggccagcgtcgtctataccggtgagccg
aagctcgacggcatctcgctgagcctgacctaccaggatggcgagctggtgcgggccggg
acccgtggcgacggtcacaccggcgaggacgtgaccgccaatgtgcggacactgcgcagc
gtccccctgcgcctgcgtggtgatggctacccggggcgcctggaggtccgtggcgaggtg
gtgatccgcaaggaggacttcgaacggctcaatcaggcgcgcctcgacgccggcgaacgg
cccttcgccaatcctcgtaacgccgcggccgggtccctgcgccagctcgacccgcgcatc
acggcgcggcggccgctgaccctgttcaccttcggcgtcggtgacccgctggccctgggg
gtggagagccattggcaggtgctggagtgcctggccggctgggggtttcgcaccaccgcc
ccgctggagcacctggagggtgtgtcggcctgccaggcctaccgggatcggctcatcgag
gagcgggatgcgctgcccttcgagatcgacggggccgtgttcaaggtcgacgacttggcc
gttcgcgagcagctcggcttcaccgcccgcgcgccgcgctgggcgctggccttcaagctg
ccggcccgcgaggcgaccaccgtggtcgaggcgatcgtcccctcggtggggcgcaccggc
aagatcaccccgctggcccgcctgcagccggtcgaggtgagtggggtgaccgtcgcccgg
gccagcctccacaacgccgacgaactcgcgcgtatggacgtgcgcgagggcgatacggtg
atggtgcgccgggccggcgacgtgatcccgcagatcaccgacgtggtgctggcgaagcgg
ccggagggggcgcagccgtggcgcttcgaggagcgggtgcaggcgtgcccggagtgcggg
tcggcggttcagcgcatcgagggcgaggcggcccaccgttgcgtgggcggcctctactgc
ccggcgcagcgcgagggggccatcctgcacttcgcctcgcggcgggccctggatatcgac
ggactcggcgagaagatcgtcgagcagctggtggccaaggggttggtggtggacctggcc
gacctgttccggcttggccacgcccagctggccgggctcgagcgcatgggcgacaagtcc
gccgacaacctgctcgccgccctggaccgggcgcggagcacaacgctggcgcgtttcctc
tacgccctggggatcccccatgtcggcgaggtgaccgcccgccgcctggccgaggcggcc
tacggcctgatggtcgcggtcccccgtggcgatcgggcggcgctgcgcgcggcagccggt
ctggatgcgcaaacggccatcaccagcgaggcgctgctgcgggtcatggcggcgccggcc
gacgatctggaggccatcgaagacgtggggccggtggtcgcccgggccatcgccggcttc
ttcgccgagccgcacaaccggcaggtggtggatcacctctgcgccgccggggtccactgg
cccgagccggatccgcccgagcaggccgagtcggtttcgtcgctggccgggcgggccttt
gtggtgaccggcaccctggagaccatgacccgggacgaggccaaggccgctatcgaggcg
tgcggcggccgggtgaccggcagcgtctcgcgcaagaccgactacctggtggccggggcc
gatgccggcagcaaactgaacaaggcccgcgaactcggtgtcgaagtcgtgaacgaatcc
ggcctgcgtgaactcctcgctggcgccggggcctga
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