Halomonas halophila: QWG60_01245
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Entry
QWG60_01245 CDS
T09170
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhao
Halomonas halophila
Pathway
hhao03030
DNA replication
hhao03410
Base excision repair
hhao03420
Nucleotide excision repair
hhao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QWG60_01245 (ligB)
03410 Base excision repair
QWG60_01245 (ligB)
03420 Nucleotide excision repair
QWG60_01245 (ligB)
03430 Mismatch repair
QWG60_01245 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhao03032
]
QWG60_01245 (ligB)
03400 DNA repair and recombination proteins [BR:
hhao03400
]
QWG60_01245 (ligB)
Enzymes [BR:
hhao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QWG60_01245 (ligB)
DNA replication proteins [BR:
hhao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QWG60_01245 (ligB)
DNA repair and recombination proteins [BR:
hhao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QWG60_01245 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QWG60_01245 (ligB)
MMR (mismatch excision repair)
DNA ligase
QWG60_01245 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QWG60_01245 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WJY07550
LinkDB
All DBs
Position
280831..282543
Genome browser
AA seq
570 aa
AA seq
DB search
MPRRLSLLLLCLWSLPLLADCPSWSTPRAERELSALHDRLSAWNAAYRRDGSSPVSDAVY
DQARARFDAWRRCFPEQAPDAPAPDTGPAGELAHPVAQTGLAKLADEDAVRAWLARRDDA
WLQPKVDGVAVTLVYEDGRLARAISRGDGESGQDWTRQVRRLPAVPERLTGTPPARVVLQ
GELYRRLDGHVQAETGSAGARSEVAGWLAREELDATTAGEIGLFVWAWPDGPATMGERLE
GLAAMGFPETARWSRPVAAFEEVKRLRDRRYRGALPFATDGVVLKQGRRPDGERWRAEPP
DWAAAWKYPPREALAEVRGVEFRVGRTGRITPLLHLVPVTLDGRRVSRVSAGSLERWETL
DIRPGDRVVVALAGLTIPRLDGVAWRAVERPDLSPPSADDHGPLSCWHPTPGCEGQFLER
LTWLSGGSALSIPGLGPGTWRALLEAGLVRDLLDWLALSPATLEGASGIGETRARRLAER
FAATRARPFAAWLEALGPPPGWDAGDTTGWTTLASRRERDWRGLPGVGPVRAEALAAFFA
DPQVRTLAARLEAAGIDGFSGAASVLPAQR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccgtctttccctgcttctcctctgcctgtggtcgttgccgctgctcgccgac
tgtccgagctggtcgacgccccgggccgagcgcgagctcagcgcattgcacgaccgcctg
agcgcctggaacgccgcctatcgccgcgacggtagctcgccggtaagcgacgccgtctat
gatcaggcccgagcgcgtttcgacgcctggcgccgctgctttcccgagcaggcccccgat
gcgccggcacccgacaccggcccggccggcgagctcgcccatcccgtcgcccagaccggg
cttgccaagctcgcggatgaagacgccgtgcgcgcctggctggcgcgacgtgacgatgcc
tggctgcagcccaaggtggatggcgtggcggtgacgctggtctacgaggacggccggctg
gcccgggcgatcagccgcggcgacggcgaaagcggccaggactggacgcggcaagtacgg
cgcttgcccgcggtgcccgagcggctgacgggcacgccgccggcccgcgtggtgctgcag
ggcgagctctaccggcgcctcgacggccacgttcaggcggagacgggaagcgcgggcgcg
cgcagcgaggtggcgggctggctggcgagggaagagctcgatgcgaccacggccggcgag
atcggcctgttcgtgtgggcctggcccgacgggccggcgaccatgggcgagcgcctcgag
ggcctcgccgccatgggcttccccgagacggcgcgctggagccgccccgtggcggcgttt
gaggaggtgaagcgcctgcgcgatcgtcgctatcgcggtgcgctgcccttcgccaccgac
ggcgtggtgctcaagcagggccgtcggccggacggcgagcgctggcgagccgagccgccg
gactgggccgcggcctggaaatatccgccccgggaggcgctggccgaggtgcgcggcgtc
gagttccgcgtcggccgcaccgggcgcatcacgccactgctgcacctggtgccggtcacc
ctcgacggacgccgcgtgagccgggtgtcggcgggctcgctcgaacgctgggagacactc
gatattcgccccggcgatcgcgtggtcgtggccctggccgggctgacgatcccgcggctg
gacggcgtggcctggcgggcggtcgagcggcccgacctctcgccgccgtccgccgatgac
catggcccgctttcctgctggcacccgacgccgggctgcgagggccagttcctcgaacgg
ctgacctggctctccggcggatcggcgctgtccatccccgggctcgggccgggcacctgg
cgcgccctgctcgaggccggcctggtgcgggatctgctcgactggctggcgctatcgccc
gccacccttgagggcgcctccggcatcggcgagacccgagcccggcggctggccgagcgc
ttcgcggcgacccgggcacggccgttcgccgcctggctcgaggccctcgggccgccgccc
ggctgggacgcgggggacaccacgggctggacgaccctggcgtctcgacgcgaacgtgac
tggcgaggcctgcccggcgtgggaccggtgcgggccgaggcgctcgcggccttcttcgcc
gacccacaggtacgaacgctggcggcccggctcgaggcggccggcatcgatggtttctcg
ggcgccgcgagcgtcctccccgcgcagcgttga
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