Harpia harpyja (harpy eagle): 128142511
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Entry
128142511 CDS
T10541
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
hhar Harpia harpyja (harpy eagle)
Brite
Chromosome and associated proteins [BR:
hhar03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128142511 (SMCHD1)
DNA repair and recombination proteins [BR:
hhar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128142511 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128142511
NCBI-ProteinID:
XP_052644615
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All DBs
Position
5:complement(23381629..23473701)
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AA seq
2079 aa
AA seq
DB search
MAAAAGGSRGARRPVLLTPRGSGDRTVFLFDRRREQADLDEKVLSYGKDNYRGFRSAVCQ
VSLHGRWLLCLCYHLATSPSSEASSSHHSHVSACWNSYHRRRQSILKAFGIATDENFVIT
TTNRKEITEDNFSELVQDGVTLYLLQSVDQMLLSATKERIDFLPHYDTLVKSGMYEYYAS
EGQNPLPFALAELIDNSLSATCRNTGIRSIQIKLLFDDSHGKPAVAVIDNGRGMTSKQLN
NWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISK
PADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDDERFLHNLILEERD
KESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAITKDISPFNNI
DIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLY
DKETYPDDPCFPSKLNDDDDDEDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFEWCAP
PKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMK
IDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWTMYAAIEWDGKTYKTGQ
LVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEMKTVPISKLDRTV
SDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIEILNKKGEAMQKL
PGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQ
VVLNESNADTYAGRPLPSKTFKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGH
ATQLTTAMKPILEASGLSLQYGEVTAGTKCIIKGVTAKGCINSCQGKNFNLKVTLPGLKE
DTQIFKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFL
GASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQLLKARIEILSCKDVPPVEKIIKLLPS
SHVARLQILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGEREIHITPAMAEKIKV
NWTPRINREQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPKHIKC
KLKGPNTLQMGEELQSEIDIMITDQYGNQVQTVTSACLNSLGVSGPGLDKSNLKITWQES
TLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRVNLTAGSPAKLQFVDWPELEKPVAVIN
GRELQKPLIVQLCDQWGNPSPEPNVKISLIKGNNLKIVPSNQQLKTDENGRANLGVISIH
APRGEHTLQLKALHNKTTLDCPIVTLNVLPDPEKPVCLNVKYDKNASFPAGGTFPDFMVS
VLSEDDNIIKNINPARISMKMWEAQSSGTRIPVDVTTFSCSKVKDDKEDGFFYFRDKVVP
ERVGTYSIQFTFAMDKTNMLSSDQIIVEVVPNDPVRLLPDSLPATPAVSNVRTLTSRTLV
KDLYLHVMDEYNNRTGIDLVGRIIAKIKSPSEDDTEVPQFQGKVSTIEFPFDRGSAEINL
VLAENSPGRDSTEYILVFEPDLPALKKPLEPYCLSFMFYNDFKKQQQMATLTRERDQLSQ
SIGVYRNWFDTTNQLVTEIKCQVKEAETRETHLKNELRKHQIELPQTNTLQYVDSLIKQK
ILDQERVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTL
TTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFFRPIGNPVFARDLLT
FPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGG
LQNKAPPMDKLRGMVFGAPLPKLYSTFSGQIDLLQQYRAAVVKLDNVNKDLDLHLQSLNT
PEMQKKKQELAEQEKSLKLIEQKLGMTPSDKVTESLLQPHHMLDMSDTPIPPKRMRRETV
KKLYSSEEWISSPTKKQQQQQLLQISPSELNGTPRKRKA
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcgggaggcagccgcggagctcgcaggccggtgctgctgacgcctcgc
ggcagcggggaccgcaccgtctttctcttcgaccggcgccgggagcaggcggatctagac
gagaaagtgctcagctacggcaaggacaactaccgcggcttccgcagcgccgtctgccag
gtgtcacttcatggaaggtggctgttatgtctctgttatcacttggctacatcaccaagt
tctgaggccagttcttcacatcattctcatgtgtctgcctgctggaacagttaccatagg
aggagacagagcattttaaaggcatttggcatagctactgatgaaaactttgttatcacc
acaacaaacaggaaagaaattacagaagacaacttcagcgaacttgttcaagatggagtg
actttgtatctgctacagtcagttgatcaaatgctgctttcggcaacaaaggagcgaatt
gacttcctgccccactatgatacacttgtcaaaagtggcatgtacgagtactatgccagc
gaagggcaaaatcctttgccatttgcccttgctgagttgattgacaattctctgtcagct
acatgccgaaatactggtattcggagcatacagataaaactgttgtttgatgattcccac
ggaaaaccagctgttgctgtgatcgataatggaagaggaatgacttctaaacagcttaac
aactgggctgtatacagattgtcaaagtttacaagacaaggtgacttcgagagtgatcat
tcaggatatgtacgccctttgccagtgcctcgtagtttaaatagtgatatctcatatttt
ggagttggaggcaaacaagcagtgttcttcgttggacagtctgccagaatgataagcaaa
cctgcagattctcaggatgttcatgaacttgtcctttctaaagaggattttgaaaagaag
gagaaaaacaaagaagcaatatatagcggatacattcgaaacagaaagccatctgactct
actcacatcacaagtgatgatgaaagatttcttcataacctaatattagaagaaagggat
aaagagagtttcacagcagttgtcattacaggtgtacaaccagatcatatgcagtacttg
aaaaactattttcatctttggacaaggcagctggcacatatctatcactattacatccat
ggaccaaaaggaaatgaaactaatgctataacaaaagacataagccctttcaacaacatc
gacattcagatttcaatgtttgaaaaaggaaaagtaccaaagattgtcaatcttagggag
atcaaagatgacatgcagactttgtatataaatactgcagcagatagttttgagtttaag
gcacatgttgaaggagaaggtatagtggaaggcatcatccgatatcatcccttcctgtat
gataaagaaacataccctgatgatccatgttttccatcaaaattaaacgatgatgacgat
gatgaagactgctttatagtagaaaagggtgccagaggaaaaaggcctatttttgaatgt
ttttggaatggaagattaataccatacacaactgtggaagattttgagtggtgtgctcct
ccaaagaagagaggattggcaccaattgagtgctacaacagaatttctggtgcattattt
accaatgataagttccaggtcagcacaaacaaactcactttcatggatctggagctgaag
ctaaaagataagaatactctgttcacaagaatcttcaatggacaggagcagcgaatgaaa
attgacagagaatttgctttgtggctcaaagactgtcatgaaaaatatgacaaacagata
aaattcacagtctttaaaggaataactacacgtactgatttaccatccaaaagaatgcag
agcccttggacaatgtatgctgcaatagagtgggatgggaaaacatacaaaactggacag
ctggtgaaaactgttaagactcttccaatattctatggaagtattgagaaattttttttg
tatggagaccatgatggggatatatttgccactggaggagaggttcaaattgctttggaa
cctcaggcattgtatgctgaaatgaaaactgttccaatctcaaaacttgacagaacagtg
tctgacaaagctgttaaaaaatacatagaggatgaaatggcaagacttcctgacaaatta
tcagtaacatggcctgaaggagatgagttattaccaaatgaaacaagatttgctggtaca
ccaataggagcattaagaatagaaattttgaataaaaaaggagaagcaatgcaaaaactt
ccaggtacaagccacggaggttcaaagaaacttcttgttgaactcaaggttattttacat
tcacctactgggaataaagaaattatttcccatatcagtcagcatggaggcaaatggccg
tactggtttaaaaaaatggaaaatcttcagaaacttgggaactacaccttgaaactgcaa
gtagtattgaatgaaagcaatgcagacacttatgcaggaaggcctctaccatctaaaaca
tttaaatttactattatagagggcaaaccagagaaattttcagttggtcttttggagctt
ccttttcgggttggagtaccttttaatattcctttggaattgcaggatgaatttggtcat
gcaacacagctgacaactgccatgaaaccaattcttgaagctagtggtttgtcattgcag
tatggagaagtaactgcaggaacaaagtgcatcattaagggtgtcactgctaaaggctgt
ataaatagttgccagggcaagaactttaatctgaaggttactcttcctggtttgaaagaa
gacacacaaatctttaaaataagattgcagcctggccctcctcatcaattgaaagtaaaa
ccagattctgaaattctaaagattgaaaatggtacagctttcccctttcaggttgaagta
ctggatgaatcaggaaatataacagcacagccaaagttgatagttcattgtaagttttta
ggtgcttcaaaccttcctgtgtattctgtggactgcagtaatgcaggaacaaacatttta
actggtccagttatacatgtacagaatataaagaaagaccagttgctgaaagcaaggatt
gaaatacttagttgtaaagatgtgccaccagtggaaaagataattaaacttcttcctagc
agtcatgttgcaagactacagatcttaagtatggatggacaaaaagctattcaaattaaa
catcaggatgaaattaattgggttgctggcgatgtcatgcacaaccttatatttcagatg
tatgatgaaggagaaagggagatacacataactccagctatggcagaaaaaatcaaggtt
aactggacacctagaattaacagagaacagctgattcagggattattacctgatgtaaaa
gtaccaacatcagtaaaagatgttcgttactgtctaattacttatcttgatgaccatgtg
tctttggagagtgcgttcacagtcagaccacttcctgatgaacccaaacacattaaatgt
aaattaaaaggaccaaacacactgcagatgggtgaagaactacaaagtgaaattgatata
atgattacagatcagtatggaaatcaggttcagacagtgacatctgcatgtctaaattcc
ctaggagtttctgggcctggacttgataaatccaatttgaaaataacttggcaggaaagt
actctaacaatgagagtaaaaggtattcggtttaaaccttgtttacttggaagcaaagaa
ctgtgcttcgcttggcgtgaattttctgactttctcagagtaaatttaactgcaggatcc
cctgctaaattacaatttgtggattggccagagttagaaaagcctgttgcagtgattaat
ggtagagaattgcagaagccccttattgttcagctgtgtgatcagtggggaaatccatct
cctgaacctaatgtcaaaatcagccttataaagggtaacaacttaaagattgttccttca
aaccagcaacttaaaacagatgaaaatggtagggctaacctgggagttattagtattcat
gcacctaggggagagcacactttacagcttaaagccttacacaacaagaccacattagat
tgtcctatagtcacattaaatgtcctgcctgatcctgagaaacctgtctgcttgaatgtt
aaatatgacaaaaatgcttcttttccagcaggaggtaccttccctgattttatggttagt
gttctttctgaagatgacaacattattaaaaatattaatccagcacggatttctatgaaa
atgtgggaagcacagagcagtggaactaggataccagttgatgttacaacatttagctgt
agtaaagtgaaggatgacaaagaagatggtttcttctacttcagggataaagtggttcca
gagagagtgggcacttacagtatccagtttacctttgcaatggataagacaaatatgctc
agcagtgaccagattatagttgaagttgtacctaatgaccctgtacgcttgttacctgat
tctttaccagctactccagcagtttccaatgttcgaactcttactagccgtacactggtc
aaggatttatacctccatgtaatggatgaatacaataaccgcactggaattgatctagtt
ggcagaataatagcaaaaattaagagccccagtgaagatgacacagaggtcccacagttt
caggggaaagtcagtacaattgagtttccatttgacagaggatcagctgaaattaatcta
gtgctggctgaaaacagccctggaagagatagcactgaatatattcttgtatttgagcca
gatctgccagctttgaaaaaacctttggaaccatactgtctgtcatttatgttttacaat
gatttcaagaagcagcaacagatggcaacacttacaagggagagagaccaattatctcag
tccataggtgtttacagaaattggtttgatactactaatcagcttgtaactgaaattaaa
tgtcaggttaaagaagctgaaacaagagaaactcacctgaagaatgaactgagaaaacac
caaattgaattaccacagacaaacacacttcagtatgtggattctcttataaaacaaaag
atcttggatcaagaaagagtaatgaaacagccaagacgaacttgtaccctcccaaactat
ccaaaaggcaaccaggatattttaggcaagattgcacatttagctcaaattgaggataat
gaagcagcaaaagttatctcttggcatttggcaagcgacatggactgtgtagtcacactg
actactgaagccgctcgttctatttttgatgaaactcaaggtcgacaacaagtgttaccc
cttgattctatttacaagaagacactccctgattggaacaggcctttgcctcacttaaga
aatggaaaaatcttcttcagacctattggaaatcctgtatttgccagagatctgttaaca
tttccagataatgtagagcattgtcaaacagtgtttgggatgctcttgggtgacactatc
attatagataacttggatgctgccaaccattacagaaaagaggttgtaaaaattacacat
tgccctactttgctgactagggaaggagacaggattcgcagcaatgggaaatttggaggc
cttcagaataaagctcctccaatggacaaactcagaggaatggtatttggagcacccctg
ccaaaactttactctactttctctggacagatagatcttcttcagcaataccgtgcagca
gtggtgaaacttgataatgtgaataaggaccttgatttacatttgcagtcacttaacact
ccagaaatgcagaagaaaaaacaggaacttgctgaacaagagaaaagcctcaagctaata
gagcaaaaattgggtatgactccatcagataaagtcactgaatcattacttcagccacat
catatgttagatatgtctgacacccccatccctcccaaaagaatgcgaagagaaacagta
aaaaaattgtatagctcagaagaatggatctcctctcccacaaagaagcagcagcaacag
caactgctgcaaatatccccttcagaacttaatgggactccacgaaagagaaaggcataa
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integrated database retrieval system
