Halobacterium hubeiense: Hhub_3665
Help
Entry
Hhub_3665 CDS
T04202
Symbol
ligA
Name
(GenBank) DNA ligase (NAD)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhb
Halobacterium hubeiense
Pathway
hhb03030
DNA replication
hhb03410
Base excision repair
hhb03420
Nucleotide excision repair
hhb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hhub_3665 (ligA)
03410 Base excision repair
Hhub_3665 (ligA)
03420 Nucleotide excision repair
Hhub_3665 (ligA)
03430 Mismatch repair
Hhub_3665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhb03032
]
Hhub_3665 (ligA)
03400 DNA repair and recombination proteins [BR:
hhb03400
]
Hhub_3665 (ligA)
Enzymes [BR:
hhb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hhub_3665 (ligA)
DNA replication proteins [BR:
hhb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hhub_3665 (ligA)
DNA repair and recombination proteins [BR:
hhb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hhub_3665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hhub_3665 (ligA)
MMR (mismatch excision repair)
DNA ligase
Hhub_3665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hhub_3665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CQH62166
UniProt:
A0A0U5H6V9
LinkDB
All DBs
Position
I:2416484..2418619
Genome browser
AA seq
711 aa
AA seq
DB search
MADADALEDAPEDNPYVRDPDTDFAPVEDLTEDDAEEQVKLLREAVRYHDYRYYVQNDPV
ISDYAYDRLFERLQQLEDAFDLQTEDSPTQRVGGEPVEGLGTVEHVAPMLSIDSSGEEAD
VREFAARVEREVGETDFVCEPKFDGLSVEVVYEEGRYVRAATRGDGETGEDVTENVRTIE
SVPQRLRGDPPDFLAVRGEVYIPREAFQEYNAERVERGEEPFANPRNAAAGTLRQLDPSV
TAERPLDCFFYDVLAAGKSEADVDADASRGGLDAGFDTHWAEHEALPDWGLKVNERTELA
DDVEEAIAFRDDLAAVREDLNYEIDGVVLKVDDRRACVDLGVTARHYRWAYAYKFPPRAE
VTTIRDVVVQVGRTGRLTPVALLEPVEVGGVTVSRASLHNQEEIAEKGVGIGDDVRVERA
GDVIPYVDEVVESHSEGHFQMPEECPRCGSDVEYDGPIAYCTGGLACPAQLVRAVGYFAD
VLDVEGIGEAAAQQFVEEGLVEDDVADLYELAEADLAELEGWGERSARNLLAELDAARHP
PLGEFLAAIGIPEVGPTVARDLADHFGTLDALLSADERDLREVEGVGEVVAGHVREFLDN
ERNRRVIERLRDEDRLGEPEFPEETGGDELEGLTVVFTGSVEGWTRDDLQDLVVRHGGDA
PSSVSGNTDYLVVGENPGTSKREDADEHDVPELSPGEFFELLDERGVDADR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcggacgccctcgaagacgcgcccgaggacaacccctacgtccgagacccc
gacaccgacttcgcgcccgtcgaggatctcaccgaggacgacgccgaagagcaagtgaaa
ctgctccgggaggccgtccgctaccacgactaccgctactacgtccagaacgaccccgtc
atctccgattacgcctacgaccggctgttcgagcgcctccagcagttagaggacgccttc
gacctccagaccgaggacagcccgacgcagcgcgtcggcggcgagcccgtcgagggactg
ggcaccgtcgagcacgtcgcgccgatgctctccatcgactccagcggcgaggaggccgac
gtccgagagttcgccgcccgcgtcgagcgcgaggtcggtgagacggacttcgtctgcgag
ccgaagttcgacgggctctccgtggaagtcgtctacgaggagggccggtacgtacgcgcc
gccacgcgcggcgacggcgagaccggcgaggacgtcaccgagaacgtccgcaccatcgag
agcgtcccccagcgcctgcgcggagacccgccggacttcctcgcagtgcgcggcgaggtg
tacatcccgcgggaggcgttccaagagtacaacgccgagcgcgtcgagcgcggcgaggag
ccgttcgcgaatccccggaacgccgccgccgggacgctgcgccaactcgacccgagcgtc
accgccgaacgccccctcgactgcttcttctacgacgtattggctgcgggaaagagcgag
gcagacgtggatgcggacgcctcgcgcggcggcctcgacgccggcttcgacacgcactgg
gcggaacacgaggcgctccccgactggggattgaaggtcaacgagcgcaccgaactcgcc
gacgacgtcgaggaggccatcgcgttccgcgacgacctcgcggccgtgcgcgaggacctg
aactacgaaatcgacggcgtcgtactcaaagtcgacgaccgccgggcgtgcgtggacctc
ggagtcacggcccgccactaccggtgggcgtacgcgtacaagttcccgccgcgcgcggaa
gtcacgacaatccgggacgtcgtcgtgcaggtcggacggacgggccggctcacgccggtc
gcgctgctcgaacccgtcgaagtcggcggcgtcacggtctcgcgcgcgagcctccacaat
caggaggagattgcggagaagggcgtgggaatcggcgacgacgtgcgcgtcgagcgcgcc
ggcgacgtgattccgtacgtcgacgaagtggtcgaatcccacagcgaggggcacttccag
atgccggaggagtgcccgcgctgcgggagcgacgtggagtacgacggccccatcgcgtac
tgcacgggcgggctggcgtgtcccgcccagttggtgcgcgcggtcggctacttcgcggac
gtcctcgacgtcgagggcatcggcgaggcggccgcccagcagttcgtcgaggaagggctc
gtcgaggacgacgtcgcagacctctacgaactcgcggaagcggacctcgcggaactggag
gggtggggcgagcggagcgcgcggaacctgctcgcggagctggacgccgcgcgccacccg
ccgctgggcgagttcctcgccgccatcggcatccccgaggtcgggccgacggtcgcccgc
gacctcgccgaccacttcgggacgctggacgcgctactttccgccgacgagcgcgacctc
cgcgaggtcgagggcgtcggcgaggtggtcgccggccacgtccgggagttcctcgacaac
gagcgcaaccgccgcgtcatcgagcgcctccgcgacgaggaccgcctcggcgaacccgag
ttccccgaagagaccggtggcgacgaactcgagggactcactgtcgtcttcacggggagc
gtcgaggggtggacgcgagacgacctccaggacctcgtggtgcgccacggcggcgacgcg
ccctcctcggtgtccgggaacaccgactacctcgtcgtcggcgagaaccccggcacgagc
aagcgcgaggacgccgacgagcacgacgtccccgagctctcgcccggggagttcttcgag
ctactggacgagcgcggcgtggacgcggaccgatag
DBGET
integrated database retrieval system
