Herbaspirillum huttiense: E2K99_11320
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Entry
E2K99_11320 CDS
T05937
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03030
DNA replication
hhf03410
Base excision repair
hhf03420
Nucleotide excision repair
hhf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2K99_11320 (ligA)
03410 Base excision repair
E2K99_11320 (ligA)
03420 Nucleotide excision repair
E2K99_11320 (ligA)
03430 Mismatch repair
E2K99_11320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhf03032
]
E2K99_11320 (ligA)
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_11320 (ligA)
Enzymes [BR:
hhf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E2K99_11320 (ligA)
DNA replication proteins [BR:
hhf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2K99_11320 (ligA)
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E2K99_11320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2K99_11320 (ligA)
MMR (mismatch excision repair)
DNA ligase
E2K99_11320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2K99_11320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DUF4796_N
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QBP75569
LinkDB
All DBs
Position
2489533..2491605
Genome browser
AA seq
690 aa
AA seq
DB search
MQDDLFSAGRPPQGEPDWLSRARVLRDELNRHNHSYYVLDQPSIPDAEYDRLFQELQALE
TAHPELLTPDSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFADEDIEAFDKRVRDGLETLQ
EVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGENLPQ
VIDVRGEVLMYKDDFARLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYG
IGVLEGAEMPASHSALLDWYQQLGLPVCKERAVVTGAAGLLDFFRSIGAKRERLPYEIDG
VVYKVDRLDQQKHLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPV
FVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAFVPEKRPADARAFVMPA
NCPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR
QVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKTTTLARFIYALGIRHVGEATA
KELARHFGGIDKLLAASEEQLLEVADIGPVVAASIRAFFNDPINVELVEQLRAVGVHWPE
SEGVDAGAKHLAGKTFVLTGTLPNLSRDEASQLIEAAGGKVSGSVSKKTSYVVAGAEAGS
KLAKAEELGIAILDEDALKALCAGQDASET
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacgacttgttttccgccggacggcccccgcaaggggagccggactggctgtcg
cgcgcccgtgtgctgcgcgacgaactgaaccgccacaaccacagctattacgtactcgac
cagcccagcatcccggacgcggaatatgaccgcctgttccaggaactgcaggcactggaa
accgcccatcccgaactgttgacgcctgattcgccgacgcaacgcgtgggtgccggtccg
ctgccgcagttcgaaccggtgcgccatgacatccccatgctctcgctgggcaacggcttt
gccgacgaagacatcgaagccttcgacaagcgcgtgcgtgatggcctggaaaccttgcag
gaagtgcgctacgccaccgagctgaagttcgacggcctggccatcagcctgcgctacgaa
aacggcgttctggtgcaggccgccacgcgcggcgacggcaccacgggcgagaacgtgacc
gccaacatccgcaccgtgcgtgccattcccctgcgcctgcacggcgaaaacctgccgcag
gtgatcgacgtgcgtggcgaagtgctgatgtacaaggacgacttcgcgcgcctgaaccag
cgccagcgcgatgccgggcagaaggaattcgccaacccccgcaatgccgccgccggcagc
ctgcgccagctggattcccgcatcaccgcgcaacgcacgctgcgcttcttcgcctatggc
attggggtgctggaaggggcagagatgccggcttcgcactcggccctgctggactggtat
cagcaactcggcctgccggtgtgcaaggagcgcgccgtggtgacgggggctgccggtctg
ctggacttcttccgcagcatcggtgccaagcgcgaacgcctgccttacgagatcgacggc
gtggtctacaaggtggaccggctggaccagcagaagcacctgggcttcgtctcgcgcgct
ccgcgctttgcgctggcccacaaattcccggcgcaggaagcgctgaccgtggtacaggac
atcgaagtgcaagtcggccgcaccggtgccatcactcctgtggcgcgcctgaatcccgtc
ttcgtcggtggggtgacagtcaccaacgcgaccctgcacaacgaagatgaagtccgccgc
aaggacatccagatcggcgacaccgtcatcgtgcgccgcgccggtgacgtgattccggaa
gtggtggccttcgtgcccgagaagcgtccggctgatgcgcgcgccttcgtcatgccggcc
aactgcccggtgtgcggctcgcccatcgtgcgggcggaagatgaagcagtggcacgctgt
tcgggcggctggctgaaatgttcagcacagcgcaagggcggactgcagcattttgcttca
cgccgcgccatggacatcgaaggtctgggcgagcaactggtcgagcaactggtggatcgc
caggtggtcaacacgccggcggatctgtatcgcctcggcttgtcggcgctggccgaactg
gaccgcatggccgagaaatcggcgcagaacgtgctggatgctctgcagaagtccaagacc
accacgctggcacgtttcatctacgcgctgggcatccgccacgtgggcgaagccacggcc
aaggaactggcgcgccatttcggcggcatcgacaagctgctcgccgccagtgaagaacaa
ctgctggaagtggccgatatcggtccggtggtcgccgcctcgatccgtgccttcttcaat
gatccgatcaatgtcgagctggtcgagcagttgcgcgcggtcggtgtgcactggcccgag
agcgagggcgtcgatgccggtgccaagcatctggccggcaagaccttcgtgttgaccggc
accttgcccaacctgtcgcgcgatgaggcctcgcagctgatcgaagcggctggtggcaag
gtttccggttccgtgtcgaagaaaaccagttacgtggtcgccggggccgaagccggcagc
aagctggccaaggccgaggagctgggcatcgccatcctcgatgaggacgcactgaaggcg
ctttgcgccggtcaggatgcgtcagaaacgtaa
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