Halomicronema hongdechloris: XM38_009000
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Entry
XM38_009000 CDS
T04928
Symbol
yodJ_2
Name
(GenBank) Putative carboxypeptidase YodJ
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
hhg
Halomicronema hongdechloris
Pathway
hhg00550
Peptidoglycan biosynthesis
hhg01100
Metabolic pathways
hhg01502
Vancomycin resistance
hhg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
XM38_009000 (yodJ_2)
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XM38_009000 (yodJ_2)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
XM38_009000 (yodJ_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hhg01002
]
XM38_009000 (yodJ_2)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hhg01011
]
XM38_009000 (yodJ_2)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
hhg01504
]
XM38_009000 (yodJ_2)
Enzymes [BR:
hhg01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
XM38_009000 (yodJ_2)
Peptidases and inhibitors [BR:
hhg01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
XM38_009000 (yodJ_2)
Peptidoglycan biosynthesis and degradation proteins [BR:
hhg01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
XM38_009000 (yodJ_2)
Antimicrobial resistance genes [BR:
hhg01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
XM38_009000 (yodJ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VanY
Motif
Other DBs
NCBI-ProteinID:
ASC69970
UniProt:
A0A1Z3HI61
LinkDB
All DBs
Position
complement(929525..930319)
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AA seq
264 aa
AA seq
DB search
MTYRTLPSLEAHGVLDLTTPLPHSPWSDLVSWSEAPSITINGWAARAVIALLSLAGGGGP
GPEAAQLPVTSALHSVTTEALYQVPALLQRYGHRAYGDANPQDLAVIASYSTPRAQRFER
LKPPAALALFKLIDAARRDGVWIVPVSGFRDQERQAMLFQRRLEQTGTATAAAKTVAPPG
YSEHHTGYAVDLADGLARAQDISPRFETTQAFRWLQRHGREYGFELSFPPNNPQGIAYEP
WHWRFIGSAEAAYLFRQQRAKPSQ
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcgcactctccctagccttgaagcccatggcgtcttggacctcactacgccc
ctacctcatagcccttggtcagaccttgtctcgtggtctgaagcgccgagcattacgatt
aatggctgggctgctagggcagtcattgccctattgagcctggctgggggaggggggcct
gggccagaggcagcccaattgccagtgacctcggccctacacagcgttaccaccgaggcc
ctctatcaggtacccgcgctgctgcagcgctatggccatcgagcctatggggacgccaat
ccccaggacctagccgtgatcgccagttactcaacccctcgggcacaacgattcgaacgg
ttaaagcccccggcagctctggcgctgtttaagctaatcgatgcggcccgccgagacggg
gtgtggatcgtgccggtatctggatttcgagaccaggaacggcaagccatgctgtttcag
cgccggctagagcagacgggaaccgccactgctgctgccaagactgtggcgccccctggc
tatagtgagcatcacacaggctacgccgttgatttggcggacggtctagcccgggcccag
gatattagccctcgatttgaaaccacccaagcatttcgatggctgcaacgccatggccga
gagtatggcttcgagctatcgtttccccctaataatccccaggggattgcctatgagccc
tggcactggcgctttatcggctccgccgaagccgcctacctgtttcggcagcagagagcc
aagccatctcagtaa
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