Halomicronema hongdechloris: XM38_016220
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Entry
XM38_016220 CDS
T04928
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhg
Halomicronema hongdechloris
Pathway
hhg03030
DNA replication
hhg03410
Base excision repair
hhg03420
Nucleotide excision repair
hhg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XM38_016220 (ligA)
03410 Base excision repair
XM38_016220 (ligA)
03420 Nucleotide excision repair
XM38_016220 (ligA)
03430 Mismatch repair
XM38_016220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhg03032
]
XM38_016220 (ligA)
03400 DNA repair and recombination proteins [BR:
hhg03400
]
XM38_016220 (ligA)
Enzymes [BR:
hhg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
XM38_016220 (ligA)
DNA replication proteins [BR:
hhg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XM38_016220 (ligA)
DNA repair and recombination proteins [BR:
hhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
XM38_016220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM38_016220 (ligA)
MMR (mismatch excision repair)
DNA ligase
XM38_016220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XM38_016220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ASC70677
UniProt:
A0A1Z3HKQ8
LinkDB
All DBs
Position
complement(1721438..1723558)
Genome browser
AA seq
706 aa
AA seq
DB search
MSGATESTNSTTRQRAEEVRSHLQRASYAYYVLDDPIMEDEVYDRLYRELQDLEAADPEL
ITPDSPTQRVGEKPAAQFQSCAPPHPLYSLENAFRLEEFRAEERWRRLAPELAPEVEAAA
YVAELKIDGSALALTYEHGVLVRGYPRRRPRPGKTSPRMSKPFGRFRLRLAPRPCPSVGR
SARRSLLPLDVFQAINQERAARGEPLLQSPQCGSRHPEAARFPHRARRRLDFFPYTMYVG
GKEGLGDREEGTDRPRRGAIQTSNLSLKTQWQALDRLEEMGFKVNPSSATMPSAEAVQDY
YTHWATPAPRRCRISPDGVGSSPRLLGLQQALGFTQKFPRWAIALKYPAEEAPTILQEVG
FQVGRTGAVTPVARLNPVQLAGTTVSRATLHNVDRIAELDVHIGDTVVLRKAGEIIPEVL
RVMPALRPPEAPPVTMPSHCPECGEPLVKPAEEAITRCINTSCPAIVQGALLHWASRDAL
DIDGVGEKWIQQWVEQGLVHSVADLYELTVADLLPLERMGPQLAQKLVAAIAASKTKPWS
RVLYGLGIRHVGSVNAQLLVQHFRDVDALAAAAPEAITAVYGIGPEIAQSVYQWFRVPAN
QTLIEHLKQVGLQLANQAPEAPSPEARSLSGKTFVLTGSLPSLTRSEAKAKIEDAGGKVT
SSVSRKTDYVVVGREAGSKLETAKQLDIPQLSEADLLALLAHSADA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggcaaccgaatcgactaactccactacacggcagcgggccgaggaggtgcga
tctcacctgcagcgagccagttatgcctactacgtcctcgatgatccgatcatggaggac
gaggtttacgatcgcctctatcgcgaactacaggacctggaggcggctgatcccgagctg
attacccccgatagccccacccaacgagtcggggagaagcccgcggcccaatttcagtcc
tgtgcgccaccgcatcccctttacagcctagaaaacgcctttcgactcgaggagtttcgg
gcggaagaacgctggcggcgactagccccagagctagccccagaggtggaagctgctgcc
tacgtagccgagcttaaaatcgatggctctgccctggccctcacctatgagcatggggtg
ctggtgcggggctacccgcggcgacggcctaggccggggaagacatcacccagaatgtca
aaaccattcggacgattccgcttgcggttggcccctagaccctgccccagcgttggtaga
agtgcgaggcgaagcctcctccccctagatgtctttcaggccatcaaccaagagcgcgca
gccaggggcgagccccttttgcaatccccgcaatgcggcagccggcaccctgaggcagct
agattcccgcatcgtgcccgacgacggttagatttcttcccctacaccatgtatgtcggc
ggcaaagagggcctaggagacagggaagagggaacagaccgccccagaagaggcgcaatc
caaacgtccaacctttccctcaagacccaatggcaagccctagaccgcttagaagagatg
ggttttaaggtcaacccctcatcggcaactatgccctcggctgaggcggtgcaggactat
tacactcactgggccaccccagcgccacggcgttgccgtatctcacccgatggggtgggg
tcaagccctcgactcctggggctgcagcaggccctaggattcacccaaaagtttccccgc
tgggccatcgccctgaagtatccagccgaggaggcccccaccatcctccaggaggtgggg
tttcaggtgggccgtaccggagctgtcacccctgtggcccgcttgaatccagtgcagttg
gccgggaccaccgtctcccgggcgaccctacacaatgttgaccgcatcgccgagttagat
gttcatattggcgacacggtggtcctgcgcaaagccggggaaattattcccgaggtactg
cgggtgatgccggctctgcgccccccagaggccccgccggtgaccatgcccagtcactgt
cctgagtgtggggaacccctagtgaagccggcagaggaagcgatcacccgctgcatcaat
acctcctgtccagccatcgtccagggagccctgctccattgggccagccgcgatgcctta
gatattgatggtgtcggggaaaagtggatccagcagtgggtagagcaggggctggtccac
tctgtggccgacctctatgagctcacggtggccgatctattaccactagagcgtatgggg
ccgcaattggcccagaaactggtggctgcgatcgcagcctcaaagactaaaccctggtct
cgggtgctgtatggattgggcattcgccatgtgggcagcgttaacgcccaactgctggtc
caacatttcagggatgtcgacgcgctagccgctgccgccccagaggcgatcacggcagtc
tacggcattggcccggaaatcgcccaatccgtctatcagtggtttcgtgttcctgccaac
caaactctaattgagcacctgaagcaggtgggcctgcagttggctaaccaggccccagag
gcccctagccccgaagcccgctccctgagcggcaaaacctttgtgctcaccggtagcctc
cccagcctcacccgcagcgaggccaaggccaagatcgaggacgctggcggcaaagtcacc
agctccgtcagccgcaagaccgactatgtcgtcgtcggtcgcgaggctggctccaagcta
gaaaccgccaagcagctcgatatcccccaattgagcgaggctgacttgttggccctgttg
gcccactcagcagacgcctaa
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