Haloarcula hispanica ATCC 33960: HAH_0304
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Entry
HAH_0304 CDS
T01597
Symbol
lig1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hhi
Haloarcula hispanica ATCC 33960
Pathway
hhi03030
DNA replication
hhi03410
Base excision repair
hhi03420
Nucleotide excision repair
hhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAH_0304 (lig1)
03410 Base excision repair
HAH_0304 (lig1)
03420 Nucleotide excision repair
HAH_0304 (lig1)
03430 Mismatch repair
HAH_0304 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhi03032
]
HAH_0304 (lig1)
03400 DNA repair and recombination proteins [BR:
hhi03400
]
HAH_0304 (lig1)
Enzymes [BR:
hhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HAH_0304 (lig1)
DNA replication proteins [BR:
hhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HAH_0304 (lig1)
DNA repair and recombination proteins [BR:
hhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HAH_0304 (lig1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HAH_0304 (lig1)
MMR (mismatch excision repair)
DNA ligase
HAH_0304 (lig1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HAH_0304 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
5_3_exonuc
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEM55930
UniProt:
G0HSA4
LinkDB
All DBs
Position
I:288006..290090
Genome browser
AA seq
694 aa
AA seq
DB search
MAVADDADLADNPYVEGPPTEFEDTTTLDEATAREQADQLREALRYHDYRYYVENDPVIG
DRAYDALFARLQRLESAFDLDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVR
EFDERVRDGLGTDAVQYFCEPKFDGLSIEIVYEDGVYQRAATRGDGEVGEDVTENVRTIS
SVPQRLRGDYPDFLAVRGEVYIPRDAFTAFNRERVERGEDPFANPRNAAAGTLRQLDPAV
TAERPLSVFFFGVLDASVSFESHSEIHERFPEWGLRVCQRTAVVDDIDATIDYRTDQQQA
RDDLDYEIDGVVIKVDDMDACDELGSTSRAPRWAFAYKFPARKEETTVRDIVVQVGRTGR
LTPVALMDPVEVGGVTVSRASLHNPSLIADLGVDVGDRVRIKRAGDVIPDVVEVLDDNGD
GHFEFPDTCPACDSPVERDGPMAFCTGGLTCPAQRERSVEHYASRDALDIEGLGEKAVQQ
LLDADLVSDPADLYELTVEDLTDLEGWGETSARNLVEGMEDAREPPLANFLVALGIPEVG
TVTARNLAQEFGTFEAILDAADEGNTDAFEAVPDVGSTVTRSIVEFFEGEGNRAVIDRLL
DHVDPQAAEEMGGDALNGQTFVFTGSLDGYTRSDAQDLIERNGGSATSSVSGNTDYLVLG
DNPGQRKQDDADEYGVETLSEGEFEELLDDAGVL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggctgtagccgacgacgctgatctcgcggacaacccctatgtcgagggacccccgacc
gagttcgaggacacaacgactctcgacgaagcgacggcccgcgagcaagccgaccagttg
cgcgaggcgctccgctaccacgattaccggtactacgtcgagaacgacccggtcatcggc
gaccgggcctacgacgcgctgtttgcccggctccagcgactcgaatcggcgttcgacctc
gacaccgacggcagtccgacccagcgcgtcggtggcgagccactggacgaactccccgac
gtcgaacacgtcgcccggatgggctctatcgaccagggcggcgaggaagcggacgtacgg
gagttcgacgagcgggttcgcgacgggctgggaaccgacgccgttcagtacttctgcgag
ccgaagttcgacggcctctctatcgagatcgtctacgaggacggcgtctatcagcgcgct
gcgacccgcggcgacggcgaggtcggcgaggacgtgaccgagaacgtccggaccatctcc
agtgtcccccagcggctccgcggtgactaccccgacttcctggccgtccgcggcgaggtg
tacatcccgcgggacgccttcacggcgttcaaccgcgagcgcgtcgagcgcggcgaggac
cccttcgcgaacccccgcaacgccgccgccgggacgctccgccagctcgacccggcggtg
accgcagaacgcccgctgtcggtgttcttcttcggcgtccttgacgcttcggtcagcttc
gagagccacagcgagatacacgagcggttccccgagtggggcctccgggtgtgccagcgg
accgctgtcgtcgacgacatcgacgccaccatcgactaccggaccgaccagcagcaggcc
cgcgacgacctcgattacgagatcgacggcgtcgtcatcaaagtcgacgacatggacgcc
tgcgacgaactcggctcgacctcgcgcgccccgcggtgggccttcgcctacaaattcccg
gcccgcaaggaggagacgacggtgcgggacatcgtcgtgcaggtcggccggaccggccgg
ctcacccccgtcgcgctgatggaccccgtcgaggtcggcggcgtcaccgtctcccgcgcc
tcgctgcacaacccctcgctcatcgccgacctcggcgtcgacgtgggcgaccgcgtccgc
atcaagcgggccggggacgtcatcccggacgtcgtcgaagtgctcgatgacaacggcgac
ggccacttcgagttcccggacacctgcccagcctgtgacagcccggtcgagcgcgatggc
ccgatggcgttctgcaccggcggcctcacctgccccgcccagcgcgagcgcagcgtcgaa
cattacgccagccgcgacgcgctggacatcgagggcctgggcgagaaggccgtccagcaa
ctgctggacgccgacctcgtctcggaccccgcggacctgtacgaactcaccgtcgaggac
ctcactgacctagaggggtggggcgagaccagcgcccggaacctcgtcgaagggatggag
gacgcccgcgagccgccgcttgcgaacttcctcgtcgcgctgggtatccccgaagtgggc
accgtcaccgcacgaaacctcgctcaggagttcggcacgttcgaggcgatactggacgct
gccgacgagggcaacaccgacgccttcgaggccgtgcccgacgtaggttcgaccgtcacg
cgctcaatcgtagagttcttcgagggcgagggcaaccgcgccgtcatcgaccgcctgctc
gaccacgtcgacccgcaggccgctgaggaaatgggcggcgacgccctgaacggccagacg
ttcgtcttcaccgggtcgctcgacggctacacccgcagcgacgcacaggacctaatcgag
cgcaacggcgggtcagcgacgagcagtgtctccggcaacacggactatctggtgcttggc
gacaacccaggccagcgaaaacaggacgacgcggacgaatacggcgtcgagacgctcagt
gagggcgaattcgaagaactattggacgacgcgggcgtgctgtaa
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