Hippoglossus hippoglossus (Atlantic halibut): 117752522
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Entry
117752522 CDS
T07778
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117752522 (scn4aa)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117752522 (scn4aa)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Motif
Other DBs
NCBI-GeneID:
117752522
NCBI-ProteinID:
XP_034425780
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Position
19:2620900..2666623
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AA seq
1920 aa
AA seq
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MAPVLPPRGADAFRPFSQESLAEIERVKEERKKAAEVEGHEDETTEAPNADLEAGKSLPM
IYGDPPSEMLNTPLEDLDPFYKGQNTFVVITRGNTIFRFNAEPACYILSPFSLLRRGSIK
ILIHSLFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTVEATVKVLSRGFCVGSF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRHKCVLWPIETSNETSFEFFNTTATFGDTV
SHDGTMGVNQTTYSNSTFDFMEYIQNSDNHYFVEGSLDALLCGNSSDAGMCPEKFTCMKA
GRNPNYGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFLGSFYL
INLILAVVAMAYDEQNQATQREAIEKEEEFQRLLEQLRNQDQPLNLGSRATLTSKKSLSH
HTSSQLGDDELSLERDDIVKDCNGRVIPNILIRAPTMVKSAADYELEERSLGSVHSMIHL
DGPGLTQRTASAMTVLTAAAMEELEDAQRPCPPGWYRFADKFLKWDCSPSWVVFKNWMYF
VVMDPFVDLTITICIVLNTLFMAMEHSPMTPEFEYMLLVGNLVFTGIFTAEMVFKLVAMD
PYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKII
GNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISLDCELPRWHMHDFFHSFLI
VFRILCGEWIETMWDCMEVAGAGMCLVVFMLVMVIGNLVVLNLFLALLLSSFSGDNLSAG
DEDGEMNNLQIAIGRITRGIDWFKAFVVRIVQQNLDRKPRGPEEGPTDGSEPKTEGIEMN
HLDTCQDFKMADGISNCLVEGRPSGLPVDGELSLNVPIAQGESDFENLGEEDDEDDDDDD
DADDAIDLEMLDEESNQNTENSEDECNMPRNVQLMGALCDGDSSICSTVDYQPPEPEPEE
VEEEEPEPVEPEACFTDECVSRWPCLTVDITQGRGKKWWNLRRACFTIVEHDWFETFIIF
MILLSSGALAFEDIYIERRRTIKIILEYADKVFTYVFVIEMLLKWVAYGFKTYFTNAWCW
LDFFIVDISLISLVANWMGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPS
IFNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPLTEVNNRSDCMAMEEATQEA
RWVNVKVNYDNVGQGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFVIF
IIFGAFFTLNLFIGVIIDNFNQQKKKFGDKDIFMTEEQKKYYEAMKKLGSKKPQKPIPRP
TNLIQGVVFDFISQQFFDIFIMVLICLNMVSMMVETDNQSPEKEDFLFKLNVSFIVVFTG
ECLLKLFALRQYFFTNGWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKGAGIDDIFN
FETFGGSIICLFEITTSAGWDGLLLPMLNSNFPDCDPNFENPGTDVKGNCGNPGMAMIFF
CSYIIVSFLVVVNMYIAIILENFNVAQEESGDALCEDDFEMFNETWEKFDLDGTQFIEYS
RLSDFCDTLQEPLRVAKPNLLRLIEMDMPLVIGDRIHCLDVLLAVTKIVLGDTVEMAAMK
ESIEAKFILNNPTSDSFAPITTTMRHKEEQMAAVVIQRAYRTHLLKRCIRHAAFMHRSKR
SGKKDGSGDPPEREGLLARKLGVLYGSNAELAEEMEQAALETLANQEPLTPETVPQHTGA
QGGPEPPEPHVMVVPVEITNEVLLHSAPDRQLFPVDANLRDQIRCLNSENSNPNISLQLS
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgtgctccctccccgaggcgccgatgcgttccgccccttcagccaggaatca
ctggcggagatcgagagggtcaaggaggaaagaaaaaaggctgcagaagtagagggccat
gaggacgaaacgacagaagccccgaacgccgacctggaggcggggaagagcctgcccatg
atctacggagaccctccatctgagatgctcaacacacctctggaggacctggaccccttc
tacaaaggacagaacacattcgttgtgatcaccagaggaaacacaatcttcaggttcaac
gctgagccggcttgctacattctgagcccctttagtttgcttaggagaggaagcatcaaa
attcttatacattcattatttagcatgttcatcatgattacgattctgtcgaattgtgta
ttcatgacgatgagcaacccaccagcatggagtaaaaccgtggagtatgttttcactggt
atttacaccgtcgaggcaacagtcaaagtgttgtccagaggtttctgtgtggggtctttt
acattccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtc
actgagttcgttgaccttggcaacgtgtcagccctcaggacgtttcgtgttcttcgagcc
cttaaaacaattactgtgattcctggtttgaaaaccatcgtggccgctctgatccagtcg
gtgaagaaaatggtggacgtcatgattctgacggtgtttgctctggcggttttcgccctc
atcggcctccagctcttcatgggaaatctgcgacacaaatgtgtgctgtggccgatcgaa
acttcaaatgaaacttcattcgaatttttcaacaccacggcaacgttcggcgacacggtg
tcccacgacggcaccatgggcgtgaatcagacgacgtattccaacagcacctttgatttc
atggaatatattcaaaactccgataatcactactttgtggaaggaagcctcgatgctcta
ctctgtgggaacagctctgatgctggaatgtgccccgaaaaattcacctgcatgaaggcc
gggaggaaccccaactatggctacaccagctttgactcgtttggctgggccttcctcgcc
ctcttcagactcatgacccaggactactgggagaaccttttccagctgatcctgcgggca
gctggtaagacatacatgctgttctttgtggtgattatcttcctggggtccttctatctc
atcaacctcatcctggccgtggtagccatggcttacgacgagcagaatcaggcaacccag
cgagaggccatagagaaagaggaggagttccagcggctactagagcaactcaggaatcaa
gaccagcctctgaatcttgggagccgagccactttaaccagtaagaagtcgctgagtcat
cacacgtcgtctcagttgggggacgatgaactgagtcttgaacgtgacgacattgtcaag
gattgcaatgggagagtcattcccaacatactcatcagagcgcccaccatggttaagtct
gctgcagattatgaactcgaggaaaggtcactgggctctgtgcacagcatgatccatctg
gacggaccaggcctgacgcagaggacagcgagtgctatgaccgtgctcactgcagctgct
atggaagagttggaggatgcccagaggccatgcccacccggctggtacaggtttgccgac
aagttcctgaagtgggactgctccccgtcctgggtggtctttaaaaactggatgtacttc
gtggtgatggaccctttcgtcgacttgaccatcaccatctgcatcgtgctcaacaccctc
ttcatggccatggagcactcccccatgactccggagtttgagtacatgctcttagtgggg
aatctggttttcacagggatctttacagcggagatggtattcaagctcgttgcaatggat
ccttactattactttcaagttggctggaacatcttcgacagcatcattgtcacgctcagt
ctcgtggagttggggctggcgaatgtccaggggctctctgtcctccggtctttccgtctg
ctgcgtgtcttcaaactggccaaatcctggccaacgctcaacatgctgatcaagatcatc
ggaaactcagtgggcgccttagggaacctgactttggtgctggccatcattgtcttcatc
ttcgccgtggtgggcatgcagctgtttgggaagagctacaaggactgcgtgtgcaagatc
tccttagattgcgagctgccacgctggcacatgcacgacttcttccactcgtttctcatc
gtgttccgcatcctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggca
ggagctgggatgtgtttggtcgtcttcatgctggtcatggtcatcggaaatcttgtggtg
ctgaacctcttcctggccttgctcctcagctcgttcagcggggacaacctctcagcggga
gacgaggacggggagatgaacaacctccagattgccatcggcaggatcacgcgaggcatc
gactggttcaaggcgttcgtcgtgcgaatcgttcagcagaatctcgacagaaaacccagg
gggcccgaggagggtccgacggatggctcggagccaaaaacggaaggaatcgaaatgaac
cacttagacacctgtcaggatttcaaaatggcagacgggatatctaattgtctggttgaa
ggccggccttctggacttcctgtggacggagagctcagtctcaatgtgccaatcgcccag
ggagagtcggactttgaaaacctgggcgaggaggatgacgaagacgatgacgacgacgac
gatgctgatgacgctattgacttagagatgttagatgaagagagcaaccagaacacagaa
aactcagaagatgaatgtaacatgccaagaaatgtccagctgatgggtgctttgtgtgac
ggggattcttcgatatgcagcacagtggactaccaaccaccggagcctgaaccagaagag
gtggaagaggaagagccggaaccagtggaaccagaggcctgcttcactgacgaatgtgtg
agtcgctggccatgtctgactgtggacatcacccaaggtagaggcaagaagtggtggaac
ctccgcagggcttgcttcactattgtggagcacgactggtttgaaaccttcatcatcttc
atgatcctgctcagcagcggggctctggcctttgaagacatatacatagaaagacgccga
accatcaaaattattctggagtatgctgacaaagttttcacctacgtctttgtcatcgag
atgctccttaaatgggtggcatacggcttcaagacctacttcaccaacgcctggtgctgg
ttagactttttcattgtagatatttccctgattagtttagttgccaactggatgggctac
tctgaccttgggccaatcaaatccctcagaaccctcagggcgctgaggcccctccgagca
ttgtccagatttgaagggatgagggtggtggtgaacgctctcgttggggcgattccctcc
atcttcaacgtgcttctggtgtgtttgatcttctggctcatcttcagcatcatgggagta
aacctgttcgccggcaagttctaccgctgcatcaacaccaccacagaggagcttttcccg
ctcaccgaggtcaacaacaggagcgactgcatggccatggaggaagccacgcaggaggcg
cgctgggtcaacgtcaaagtcaactacgacaacgtggggcaaggctacctgtcgctgctt
caagtggcaacgttcaaaggttggatggacatcatgtacgctgctgtggactcaagagag
gtggaagagcaaccgtcttatgagatcaacctctacatgtacatctactttgtcatcttc
atcatcttcggcgccttcttcacactcaatctcttcatcggcgtcattattgacaatttc
aaccaacaaaagaaaaagtttggagataaagacatatttatgactgaggaacagaagaaa
tactacgaagccatgaagaagctcggttcaaagaagccacagaagccaattccacgtccg
acaaacctaatccagggcgtggtgtttgacttcatcagtcagcagttctttgacatcttc
atcatggtgctcatctgcctcaacatggtgagcatgatggtggagacggacaaccagagc
ccggagaaggaggatttcctctttaaattgaacgtgtcgttcatcgtcgtcttcaccggg
gagtgtctgttgaagctcttcgccctgcggcagtacttcttcaccaacgggtggaacgtg
tttgattttgttgtggtcatcttgtcaatagctggcacgatgctctctgacatcattgag
aagtactttgtgtcgcccactctgttcagagtgatccgactggccagaataggcaggatt
ctgcgtcttattaaaggagccaagggcatccggacgcttctctttgctctgatgatgtca
cttcctgccctcttcaatattggtctcctactcttcctcatcatgttcatcttctccata
tttggcatgtcaaactttgcctatgtcaagaagggggctgggatcgatgacatttttaac
tttgagacgtttggcggtagcatcatctgcctgtttgagatcacgacgtcggcgggctgg
gacgggcttttgctcccgatgctgaacagcaactttccagactgtgatccaaactttgag
aacccgggaaccgacgtaaagggtaactgtggcaacccgggcatggccatgattttcttc
tgcagctacatcatcgtctccttcttggtggtggtcaacatgtacatcgccatcatcttg
gagaacttcaacgtggcgcaggaggagagcggtgacgcgctctgcgaggacgactttgaa
atgttcaacgagacgtgggagaagttcgacttagacgggactcagttcattgagtacagc
aggctctccgatttttgtgacaccttgcaggagccgctgagggtggccaagcccaacctg
cttcgcctgattgagatggacatgccgctggtcatcggggacaggatccactgcctggat
gtcttgctggccgtcacaaagattgtcctgggagacacggtggagatggcggcaatgaag
gagagcatagaggcgaaattcatcctgaacaaccccacatcagactcgtttgcaccgatt
accacaacgatgcgccacaaagaagagcagatggcggctgtggtcattcagagggcttac
cgcacccacctgctaaaacgctgcatccgccacgccgctttcatgcaccgctctaagagg
tcgggtaaaaaggatggaagtggtgatccgccagaaagggaggggctgcttgcacggaag
ctgggggtgctctatgggagcaacgcagagctggcggaggagatggagcaggctgctctg
gaaactctggcaaaccaagagcctctcactcctgagacagtgccacagcacacaggggcc
cagggtggccccgaaccccctgagccacacgtcatggtcgtacctgtcgaaattactaat
gaggttttattacattctgcccccgaccgacagctcttccctgtagacgcaaacctgaga
gatcagatcagatgtttgaattcggaaaactcgaatccgaacatctcccttcaactttct
tga
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